Tc01v2_t009160.1

Overview
NameTc01v2_t009160.1
Unique NameTc01v2_t009160.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1443
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productbifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase, transcript variant X2
NoteBifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611614
GenbankXM_007047959.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g009160Tc01v2_g009160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p009160.1Tc01v2_p009160.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto19290auto19290Theobroma cacaoexon
exon-auto19291auto19291Theobroma cacaoexon
exon-auto19292auto19292Theobroma cacaoexon
exon-auto19293auto19293Theobroma cacaoexon
exon-auto19294auto19294Theobroma cacaoexon
exon-auto19295auto19295Theobroma cacaoexon
exon-auto19296auto19296Theobroma cacaoexon
exon-auto19297auto19297Theobroma cacaoexon
exon-auto19298auto19298Theobroma cacaoexon
exon-auto19299auto19299Theobroma cacaoexon
exon-auto19300auto19300Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto19301auto19301Theobroma cacaoCDS
CDS-auto19302auto19302Theobroma cacaoCDS
CDS-auto19303auto19303Theobroma cacaoCDS
CDS-auto19304auto19304Theobroma cacaoCDS
CDS-auto19305auto19305Theobroma cacaoCDS
CDS-auto19306auto19306Theobroma cacaoCDS
CDS-auto19307auto19307Theobroma cacaoCDS
CDS-auto19308auto19308Theobroma cacaoCDS
CDS-auto19309auto19309Theobroma cacaoCDS
CDS-auto19310auto19310Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t009160.1 ID=Tc01v2_t009160.1|Name=Tc01v2_t009160.1|organism=Theobroma cacao|type=mRNA|length=1443bp
ATGGCAAATTCTCTTCATTCTTCAACAAGCATTTCCCATGTGGGTTTCAG
CTCTCAATTTCTGGGATCAAATTTGGGTTCCAAGGCCTCCGTTTCCGTTT
CATTCCCTTCTTCTCATACCAATTACTCCCTCAAATCTGTTGAGATATTG
AGACAACAGTCATATAGAATAAGTGCAATGTCGAAGGTAGAGAGTAGCAG
CTTTGAGCAAGTGAAAGTTGATATCTCTTTGAGCCCCAGAGTTAATTCTG
TGAAGCCTTCAAAGACTGTGGCTATAACTGATCATGCAACTGCTCTTGTA
CAAGCTGGTATCCCTGTTATTCGGTTGGCAGCTGGAGAGCCTGATTTTGA
TACACCAGCTGTTATAGCAGAGGCCGGGATAAATGCAATTCGTGAAGGTT
ACACAAGGTACACTCCCAATGCAGGTACTTTGGAACTTCGCACGGCAATT
TGCCACAAGCTCAAAGAGGAGAATGGAATCTCTTATACACCTGATCAAAT
TTTGGTCAGTAATGGTGCTAAGCAGAGTATCATTCAAGCTGTTCTTGCAG
TTTGTTCTCCCGGGGATGAGGTAATAATTCCAGCTCCATATTGGGTGAGT
TACCCAGAAATGGCAAGGCTGGCTGATGCAACACCTGTCATTCTTCCGAC
ACTTATTTCTGAAAATTTTCTATTGGATCCAAAGCTCCTAGAGTCTAAAA
TCACTGAAAAGTCAAGACTGTTGATTCTATGTTCCCCATCCAACCCAACT
GGATCTGTTTACCCTAAAAAATTGCTTGAAAGATTTGCAGAAATTGTAGC
AAAGCATCCCAGGCTTCTGGTGCTATCTGATGAAATGTACGAACATATAA
TTTATGCACCAGCAACTCACACAAGCTTTGCATCATTGCCAGGCATGTGG
GAACGGACTCTAACAGTCAATGGATTTTCCAAGGCTTTTGCAATGACTGG
TTGGCGGCTTGGATATATTGCCGGACCTAAGCACTTTGTTGCAGCATGTA
ATAAAATCCAGAGTCAGTACACTTCGGGGGCTAGTAGTATATCACAAAAA
GCAGGAGTTGCTGCATTAGGCTTGGGCTATGCTGGTGGGGAAGCAGTTTC
TACCATGGTGAAAGCATTCAGGGAACGGCAAGATTTCTTGGTTAAGAGCT
TGGGGGAATTGGAAGGTGTAAAGATATCAGAACCTCAGGGAGCTTTCTAT
CTCTTCATTGATTTCAGTTCTTACTATGGAATAGAAGCTGAAGGTTTTGG
TAAAATTGAAAATTCAGAGTCACTTTGTAGATACCTCCTGGACAGGGCTC
AGGTTGCACTAGTTCCTGGAGATGCATTTGGGGATGATACCTGCGTTCGC
ATATCATATGCAGCATCCCTCACCACCTTACAAGCTGCTTTTGAGAGAAT
TAAGAAAGCACTTATCTCCCTGAGGCCTGCTGTTCCTGTTTAA
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protein sequence of Tc01v2_p009160.1

>Tc01v2_p009160.1 ID=Tc01v2_p009160.1|Name=Tc01v2_p009160.1|organism=Theobroma cacao|type=polypeptide|length=481bp
MANSLHSSTSISHVGFSSQFLGSNLGSKASVSVSFPSSHTNYSLKSVEIL
RQQSYRISAMSKVESSSFEQVKVDISLSPRVNSVKPSKTVAITDHATALV
QAGIPVIRLAAGEPDFDTPAVIAEAGINAIREGYTRYTPNAGTLELRTAI
CHKLKEENGISYTPDQILVSNGAKQSIIQAVLAVCSPGDEVIIPAPYWVS
YPEMARLADATPVILPTLISENFLLDPKLLESKITEKSRLLILCSPSNPT
GSVYPKKLLERFAEIVAKHPRLLVLSDEMYEHIIYAPATHTSFASLPGMW
ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQYTSGASSISQK
AGVAALGLGYAGGEAVSTMVKAFRERQDFLVKSLGELEGVKISEPQGAFY
LFIDFSSYYGIEAEGFGKIENSESLCRYLLDRAQVALVPGDAFGDDTCVR
ISYAASLTTLQAAFERIKKALISLRPAVPV*
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