Tc01v2_t008420.1

Overview
NameTc01v2_t008420.1
Unique NameTc01v2_t008420.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1578
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productphospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic
NotePhospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611532
GenbankXM_007047828.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g008420Tc01v2_g008420Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p008420.1Tc01v2_p008420.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto18111auto18111Theobroma cacaoexon
exon-auto18112auto18112Theobroma cacaoexon
exon-auto18113auto18113Theobroma cacaoexon
exon-auto18114auto18114Theobroma cacaoexon
exon-auto18115auto18115Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto18116auto18116Theobroma cacaoCDS
CDS-auto18117auto18117Theobroma cacaoCDS
CDS-auto18118auto18118Theobroma cacaoCDS
CDS-auto18119auto18119Theobroma cacaoCDS
CDS-auto18120auto18120Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t008420.1 ID=Tc01v2_t008420.1|Name=Tc01v2_t008420.1|organism=Theobroma cacao|type=mRNA|length=1578bp
ATGGCTCTTATGAATACCTCTCTTCTTTCTTCGAAGTCTCTTTACAGCAA
CACCAACTCTTTTTCCAAACCCAAGGATCAATCTCGACCAACTTTTGCTC
TCCCTCCCAGCAACAAGAATTCAACATCTCTTCCAACCATCACTGCTGTT
CATGCAGCCGAGTCCACAAAAAACCAAGTAGCAGTGAAGGAATCATCAAC
ATTTACGCAATCCATCACTAGGAAATGGACATTGGATAGCTGGAAATCGA
AGAAGATATTGCAGCTACCTCACTACCGGGATGAGAAGAAGGTGGAGTCA
GTGTTGAAGACCATTGAGTCGTTTCCTCCTATAATATTTGCTGGTGAAGC
AAGGAACTTGGAAGAGAGGCTGGCGGAGGCTGCCATGGGCAAGGCATTCT
TGCTGCAGGGTGGCGATTGTGCCGAAAGCTTCGAGGAGTTTAGCGCCAAC
AACATCCGGAATACATTCATGTTGCTGATCCAGATGGGTGTTGTGCTTAC
ATATGGTGGACAAATGCCAGTGGTTAAGGTGGGAAGAATGGCTGGACAAT
TTGCTAAGCCAAGCTCTGCTGAATTTGAGGAGAAGAATGGAATGAAGTTG
CCAAGTTACAAGGGGGACATCATGAATGCTCATGTTTTTGATAAGTCAAG
AATTCCTGACCCGCAGAGGATGATAAGGGCTTATACTCAATCCGCAGCAA
CTCTGAACCTCCTTAGAGCCTTTGCTAGTGGAGGGTACGCTGTAATGCAG
GGGGTTGCCCACTGGAATCTTGATTTTGCAAAGAATATTGAGCAGGGAGA
CAGATTCCAGGAACTTGCTGACCATCTTGATGAGGCCTTAGGATTCATGG
CTGCTGCAGGAGTCACAGTTGACGATCCTATCATGAAAACAACTGAATTC
TGGACATCTCATGAGTGCTTGCTTTTGCCTTATGAACAGGCACTAACTAG
GCTGGATTCAACTTCTGGCCTGTACTATAACTGCTCTGCTCACATGGTTT
GGTGTGGGGAGCGAACCCGGCGGCTGGATGGTGCCCATGTAGAGTTTCTG
AGAGGAATTGCCAATCCACTAGCCATAAAGGTTAGCGATAAGATGGATCC
AAATGAACTAGTTAAGCTCACTGGAATACTGAATCCTCATAACAAGCCAG
GAAGAATAACAATCATCACGAGAATGGGAGCTGACAACTTGAGAGTCAAG
CTTCCCCATTTGACGAGGGCAATTGGTAGGGCAGGCCACATTGTCACTTG
GGTCTGCGATCCAATGCACGGTAACACTATTGAGGCACCATGTGGACTCA
AAACCCGTGCCTTTGATGCAATTCTGGCTGAGGTGCAAGCGTTCTTCGAT
GTCCATGAGCAAGAAGGCAGTCACCCTGGAGGCATCCATCTAGAAATGAC
CGGGCAAGACGTGACAGAGTGCGTTGGAGGGTCTCCAACAGTGATTTATG
ATGACCTAAGCTCATGTTACCGCACACTGTGTGACCCAAGGCTTAATTCT
TCTCAGTCTCTGGAGCTGGCTTTCATCATTGCTGAGCGACTTAGGAGCAA
AAGAATTGGACTTTCCTTGGGCCTTTAA
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protein sequence of Tc01v2_p008420.1

>Tc01v2_p008420.1 ID=Tc01v2_p008420.1|Name=Tc01v2_p008420.1|organism=Theobroma cacao|type=polypeptide|length=526bp
MALMNTSLLSSKSLYSNTNSFSKPKDQSRPTFALPPSNKNSTSLPTITAV
HAAESTKNQVAVKESSTFTQSITRKWTLDSWKSKKILQLPHYRDEKKVES
VLKTIESFPPIIFAGEARNLEERLAEAAMGKAFLLQGGDCAESFEEFSAN
NIRNTFMLLIQMGVVLTYGGQMPVVKVGRMAGQFAKPSSAEFEEKNGMKL
PSYKGDIMNAHVFDKSRIPDPQRMIRAYTQSAATLNLLRAFASGGYAVMQ
GVAHWNLDFAKNIEQGDRFQELADHLDEALGFMAAAGVTVDDPIMKTTEF
WTSHECLLLPYEQALTRLDSTSGLYYNCSAHMVWCGERTRRLDGAHVEFL
RGIANPLAIKVSDKMDPNELVKLTGILNPHNKPGRITIITRMGADNLRVK
LPHLTRAIGRAGHIVTWVCDPMHGNTIEAPCGLKTRAFDAILAEVQAFFD
VHEQEGSHPGGIHLEMTGQDVTECVGGSPTVIYDDLSSCYRTLCDPRLNS
SQSLELAFIIAERLRSKRIGLSLGL*
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