Tc01v2_t007200.1

Overview
NameTc01v2_t007200.1
Unique NameTc01v2_t007200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1131
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 31 ESTs, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productauxin-responsive protein IAA9, transcript variant X1
NoteAuxin-responsive protein IAA9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611393
GenbankXM_007047625.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g007200Tc01v2_g007200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p007200.1Tc01v2_p007200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto15672auto15672Theobroma cacaoexon
exon-auto15673auto15673Theobroma cacaoexon
exon-auto15674auto15674Theobroma cacaoexon
exon-auto15675auto15675Theobroma cacaoexon
exon-auto15676auto15676Theobroma cacaoexon
exon-auto15677auto15677Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto15678auto15678Theobroma cacaoCDS
CDS-auto15679auto15679Theobroma cacaoCDS
CDS-auto15680auto15680Theobroma cacaoCDS
CDS-auto15681auto15681Theobroma cacaoCDS
CDS-auto15682auto15682Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t007200.1 ID=Tc01v2_t007200.1|Name=Tc01v2_t007200.1|organism=Theobroma cacao|type=mRNA|length=1131bp
ATGTCTCAACCGCTGCTGGGCGTGGAGGAGGAAGGGCAGAGTAATGTTTC
TTCTCCCTCTGATGACTGTATCTCCCAGAATGGCTTGGGATTAAAGGAGC
GTAATTATCTTGGACTATCAGATTGTTCCTCAGTTGACAGCTCTGGTGTC
TCGAGCTTGACAGAGGATAACAAGAACAATCTGAATTTGAAGGCTACAGA
GCTGAGGCTTGGTCTTCCTGGATCCCAGTCCCCTGAGAGAGAACCAGAGC
TTTGCTTACTGAACTCAGGAAAACTTGATGAGAAACCACTGTTTCCTCTA
CTTCCTTCTAAAGATGGAATCTGCTCATCATCACAGAAAACTGTTGTTTC
TGGAAACAAAAGGGGGTTCTCTGACACCATGGATGGATTCTCAGAGGTGA
AAGGCTCTGTGTACACTGAAAAAATTTGGATGTTTCCTGGAGCTGGTTCT
GATTCTGAATCTCCACAAACTGTGGGACACGGAAAATATCCTGGTAATCC
AGGGGTCAATGTGATGCTGTCGGCAAGGTCTTCTGGAGCTCAAGCATCTG
TAAAGAAAGATGGGCCTCCAAATGCACTACAAGAACGACCTCGTGCCCCA
AATGGAACAAGCCTCAAACAAACTGGCATTTCTAACAACAACAGCAGTGC
ACCTGCTGCCAAGGCACAGGTTGTTGGTTGGCCACCAATAAGATCATTTA
GGACTAAAACACTGGCCACTTCTTCAAAGAACAATGATGAAGTTGATGGA
AAACCAGGTCCCGGTGCTCTTTTTATCAAGGTCAGTATGGATGGGGCTCC
TTATCTGAGGAAGGTGGATTTGAGAACTTATTCAACTTATCGGGAACTAT
CTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCCTTGGTCAATGTGGG
TCTCATGGTTCTCCTGGGAAGGAAATCTTGAGTGAGAGCAAGTTGAAGGA
TCTTTTGCATGGATCAGAATATGTGCTTACATACGAAGATAAAGATGGGG
ACTGGATGCTTGTTGGAGATGTACCATGGGAGATGTTTATTGAAACATGC
AAGAGGCTGAAAATCATGAAGAGCTCTGATGCGATTGGATTAGCTCCTAG
AGCAATGGAGAAATCCAAGAACAGCAACTAG
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protein sequence of Tc01v2_p007200.1

>Tc01v2_p007200.1 ID=Tc01v2_p007200.1|Name=Tc01v2_p007200.1|organism=Theobroma cacao|type=polypeptide|length=377bp
MSQPLLGVEEEGQSNVSSPSDDCISQNGLGLKERNYLGLSDCSSVDSSGV
SSLTEDNKNNLNLKATELRLGLPGSQSPEREPELCLLNSGKLDEKPLFPL
LPSKDGICSSSQKTVVSGNKRGFSDTMDGFSEVKGSVYTEKIWMFPGAGS
DSESPQTVGHGKYPGNPGVNVMLSARSSGAQASVKKDGPPNALQERPRAP
NGTSLKQTGISNNNSSAPAAKAQVVGWPPIRSFRTKTLATSSKNNDEVDG
KPGPGALFIKVSMDGAPYLRKVDLRTYSTYRELSSALEKMFSCFTLGQCG
SHGSPGKEILSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETC
KRLKIMKSSDAIGLAPRAMEKSKNSN*
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