Tc01v2_t006860.2

Overview
NameTc01v2_t006860.2
Unique NameTc01v2_t006860.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1062
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productbranched-chain-amino-acid aminotransferase 3, chloroplastic, transcript variant X2
NoteBranched-chain-amino-acid aminotransferase 5, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611350
GenbankXM_018113808.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g006860Tc01v2_g006860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p006860.2Tc01v2_p006860.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto14958auto14958Theobroma cacaoexon
exon-auto14959auto14959Theobroma cacaoexon
exon-auto14960auto14960Theobroma cacaoexon
exon-auto14961auto14961Theobroma cacaoexon
exon-auto14962auto14962Theobroma cacaoexon
exon-auto14963auto14963Theobroma cacaoexon
exon-auto14964auto14964Theobroma cacaoexon
exon-auto14965auto14965Theobroma cacaoexon
exon-auto14966auto14966Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto14967auto14967Theobroma cacaoCDS
CDS-auto14968auto14968Theobroma cacaoCDS
CDS-auto14969auto14969Theobroma cacaoCDS
CDS-auto14970auto14970Theobroma cacaoCDS
CDS-auto14971auto14971Theobroma cacaoCDS
CDS-auto14972auto14972Theobroma cacaoCDS
CDS-auto14973auto14973Theobroma cacaoCDS
CDS-auto14974auto14974Theobroma cacaoCDS
CDS-auto14975auto14975Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t006860.2 ID=Tc01v2_t006860.2|Name=Tc01v2_t006860.2|organism=Theobroma cacao|type=mRNA|length=1062bp
ATGGAAAGCAGCGCCGTCCTCTCCAGTCTCCAGCCAACTTGCCTTATTTG
CCCTTCTCGCTCTTCCTCTTCCTCCTCCGCCGCCGCCGCCGCCGCATTTC
TTCCTCAACGAACGCGTTTCTCTCCTCCGCAGTTGCAGAAGCAAATTTTA
GCTTCTGCTTATTCTCGCAATGTTAATGAAGCTAACTATCCGTTTAGGCG
TGCTGCTGTGTTATCCGATTCTTATAGCACTGAAGCATCCGAATTGGCTG
ATATAGAGTGGGACAATCTTGGATTTGGGTTTCTTCCTACTGATTATATG
TATATGATGAAATGTACTCGAGGTGGAAACTTCTCTAAAGGTGAATTACA
ACAATTTGGGAAAATTGAATTAAGCCCCTCAGCTGGGGTCTTAAATTATG
GACAGGGATTATTTGAAGGTCTGAAAGCCTACAGGAAAGAAGATGGTAAT
ATTCTTCTTTTTCGTCCTGAGGAGAATGCTCTTCGAATGAGGTTGGGTGC
AGAGAGGATGTGCATGCCATCACCCACTGTTGAGCAGTTTGTGGAAGCTG
TAAAGGCAACTGTCCTGGCAAACAAACGTTGGGTTCCCCCCAGTGGTAAA
GGGTCCTTGTACATCAGGCCATTGCTCATGGGGAGTGGAGCTGTTCTTGG
TCTTGCACCTGCTCCTGAGTACACCTTTCTTATTTATGTCTCACCTGTGG
GAAACTATTTTAAGGAGGGTGTTGCTCCAATACATTTAATTGTTGAGAAT
GAATTGCATCGTGCCACTCCTGGCGGCACTGGGGGTGTTAAAACTATCGG
AAATTATGCTGCAGTTCTGAAGGCGCAATCTGTGGCAAAAGCCAAAGGAT
ACTCTGATGTCCTCTATCTTGATTGTGTTCACAAAAAGTATTTGGAGGAA
GTTTCCTCTTGCAACATTTTCGTGGTGAAGGGTAATGTCATCTCAACTCC
TGCAATAAAGGGAACAATCTTACCTGGCATCACAAGAAAGAGTATAATTG
ATGTTGCTCGAAGCCGGGGGTTCCAGAATTATTTTGTAGAAATAGAGGCT
GCAAGATCATAG
back to top

protein sequence of Tc01v2_p006860.2

>Tc01v2_p006860.2 ID=Tc01v2_p006860.2|Name=Tc01v2_p006860.2|organism=Theobroma cacao|type=polypeptide|length=354bp
MESSAVLSSLQPTCLICPSRSSSSSSAAAAAAFLPQRTRFSPPQLQKQIL
ASAYSRNVNEANYPFRRAAVLSDSYSTEASELADIEWDNLGFGFLPTDYM
YMMKCTRGGNFSKGELQQFGKIELSPSAGVLNYGQGLFEGLKAYRKEDGN
ILLFRPEENALRMRLGAERMCMPSPTVEQFVEAVKATVLANKRWVPPSGK
GSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPIHLIVEN
ELHRATPGGTGGVKTIGNYAAVLKAQSVAKAKGYSDVLYLDCVHKKYLEE
VSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVARSRGFQNYFVEIEA
ARS*
back to top