Tc01v2_t006500.8

Overview
NameTc01v2_t006500.8
Unique NameTc01v2_t006500.8
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1239
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productheptahelical transmembrane protein 4, transcript variant X8
NoteHeptahelical transmembrane protein 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611307
GenbankXM_018129963.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g006500Tc01v2_g006500Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p006500.8Tc01v2_p006500.8Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto14435auto14435Theobroma cacaoexon
exon-auto14436auto14436Theobroma cacaoexon
exon-auto14437auto14437Theobroma cacaoexon
exon-auto14438auto14438Theobroma cacaoexon
exon-auto14439auto14439Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto14440auto14440Theobroma cacaoCDS
CDS-auto14441auto14441Theobroma cacaoCDS
CDS-auto14442auto14442Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t006500.8 ID=Tc01v2_t006500.8|Name=Tc01v2_t006500.8|organism=Theobroma cacao|type=mRNA|length=1239bp
ATGGGCCGTGTGCAACAAGTTTGTGAAGATACAAATATGACGGTTGAAAC
AACGGAGAAGTGCAAAGTGTGTTATTCAAAGGAAGGGAAAGGGAAGAAAT
TGTGGAAAAAAGTTAAGTATCAGCTGGTGGAGTACCACTCATTGCCTGGA
TATTTGAGGGACAATGAGTATATTGTGGGCCATTATAGATCAGAATGGCC
AATGAAGCAAGTTTTGCTTAGCATCTTCAAAATTCACAACGAGACTTTAA
ATGTTTGGACGCATTTGATTGGGTTCTTCATTTTCCTTTCCCTTACCATA
TACACTGCAACGAAGGTTCCAAAGGTTGTTGATCTTCACTCTCTGCAGCA
TATTCCTGATGTATTGAGAAAGGCTGATTTACACAAACTACAGTCAGAAC
TAATCACATGCCTGCCTTCCTTGCCAAACATGCCCAATTTGCACAAACTT
CGACAGGAGTTAAAGACTAGTCTCCCTTCAATGGATTTATTTCCATCACT
CTCGGGTTGGCATGTTCTGGAACTTCTGTATAACTGTTTACCTGAGTGTT
TCTCCAGTGGGAATCACACCGATGTTTGTGTTCTGCAAAGTGTGAAGGAG
GATGTGGCAAACATAGTAGCACCCTTGATGGGGAGACCAATAACACGATG
GCCATTTTTTGCCTTCTTGGTTGGTGCAATGTTTTGCTTGCTAGCTAGCA
GCACATGCCACCTCCTCTCTTGCCACTCTAAGCGCCTATCATACATCATG
CTCAGGCTAGATTATACTGGGATTGCAGCTCTCATATCTACTTCCTTCTA
CCCTCCTGTGTATTACTCCTTCATGTGTGACCCATTCTTCTGTAACCTCT
ATTTGGGATTCATAACCATCTTGGGAATCGCAACAATCTTGTTTTCCTTA
TTACCAGTGTTTCAGAATCCCGAGTTTCGCACTATTCGTGCGTCCCTCTT
CTTTGGCATGGGCATGTCTGGGATTGCACCTATTCTTCACAAGCTTTTCT
TGTTTTGGAACCAGCCTGAGGCCCTTCACACAACCGGGTATGAGGTTTTG
ATGGGGCTTTTCTATGGTATTGGAGCTTTGGTCTATGCCACAAGGATTCC
GGAGCGGTGGAAGCCTGGAAAATTTGACATTGCTGGGCACAGCCACCAAC
TTTTTCACATCATGGTTGTGGCTGGGGCATACACTCATTATCGTGCAGGA
TTGGTTTACCTCAAATGGCGGGATCTAAATGGCTGTTAA
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protein sequence of Tc01v2_p006500.8

>Tc01v2_p006500.8 ID=Tc01v2_p006500.8|Name=Tc01v2_p006500.8|organism=Theobroma cacao|type=polypeptide|length=413bp
MGRVQQVCEDTNMTVETTEKCKVCYSKEGKGKKLWKKVKYQLVEYHSLPG
YLRDNEYIVGHYRSEWPMKQVLLSIFKIHNETLNVWTHLIGFFIFLSLTI
YTATKVPKVVDLHSLQHIPDVLRKADLHKLQSELITCLPSLPNMPNLHKL
RQELKTSLPSMDLFPSLSGWHVLELLYNCLPECFSSGNHTDVCVLQSVKE
DVANIVAPLMGRPITRWPFFAFLVGAMFCLLASSTCHLLSCHSKRLSYIM
LRLDYTGIAALISTSFYPPVYYSFMCDPFFCNLYLGFITILGIATILFSL
LPVFQNPEFRTIRASLFFGMGMSGIAPILHKLFLFWNQPEALHTTGYEVL
MGLFYGIGALVYATRIPERWKPGKFDIAGHSHQLFHIMVVAGAYTHYRAG
LVYLKWRDLNGC*
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