Tc01v2_t006440.1

Overview
NameTc01v2_t006440.1
Unique NameTc01v2_t006440.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1824
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productprobable amino-acid acetyltransferase NAGS1, chloroplastic
NoteProbable amino-acid acetyltransferase NAGS1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611300
GenbankXM_007047494.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g006440Tc01v2_g006440Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p006440.1Tc01v2_p006440.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto14254auto14254Theobroma cacaoexon
exon-auto14255auto14255Theobroma cacaoexon
exon-auto14256auto14256Theobroma cacaoexon
exon-auto14257auto14257Theobroma cacaoexon
exon-auto14258auto14258Theobroma cacaoexon
exon-auto14259auto14259Theobroma cacaoexon
exon-auto14260auto14260Theobroma cacaoexon
exon-auto14261auto14261Theobroma cacaoexon
exon-auto14262auto14262Theobroma cacaoexon
exon-auto14263auto14263Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto14264auto14264Theobroma cacaoCDS
CDS-auto14265auto14265Theobroma cacaoCDS
CDS-auto14266auto14266Theobroma cacaoCDS
CDS-auto14267auto14267Theobroma cacaoCDS
CDS-auto14268auto14268Theobroma cacaoCDS
CDS-auto14269auto14269Theobroma cacaoCDS
CDS-auto14270auto14270Theobroma cacaoCDS
CDS-auto14271auto14271Theobroma cacaoCDS
CDS-auto14272auto14272Theobroma cacaoCDS
CDS-auto14273auto14273Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t006440.1 ID=Tc01v2_t006440.1|Name=Tc01v2_t006440.1|organism=Theobroma cacao|type=mRNA|length=1824bp
ATGATGGCCGCTTCATATTCAACGGCTCGCGTCCCTCTCTTCTCTCCCGC
TCGAACCAAACTCTTATCATCCCGCCACGGCTTCAAAAAGGGCGTCGTAA
AACTAAAACCCGACTTGAAGTGCCGGGCTCAGTCTCTTAAACCGGAACCC
GGGTCCAAGCGAGGTGATTCTGTCAAGCGCAATGTGATTAACGATGAAGA
TAGCGTGGAGGAGACTTACAACACCGTCGACGATAAGCAGTTCGTGCGGT
GGTTCCGCGAGGCTTGGCCTTACCTCTGGGCCCATCGCGGCAGCACTTTC
GTTGTTATTATTTCCGGCGAAATCGTCGCTTCCCCCTCTTTGGACGCCAT
TTTAAAGGATATTGCGTTTTTGCATCACCTAGGAATCAGATTTGTTATTG
TTCCAGGAACTCACGTGCAGATCGACAAGCTTTTGGCCGAGAGAGACCAT
GAACCAAAGTATGTAGGCAGATATAGAATTACAGACTCAGAATCTCTAGC
TGCAGCAATGGAAGCAGCAGGAGGGATTCGTCTAATGATAGAGGCAAAAC
TTTCTCCTGGACCTTCCATATGTAATATCCGTCGACATGGTGATAGTAGC
CGTTGGCATGAAGTTGGTGTCAGTGTTGCTAGTGGAAACTTCCTTGCAGC
TAAGAAAAGAGGAGTTGTTGAAGGTGTTGATTATGGAGCAACAGGTGAAG
TAAAGAAGGTAGATGTTGCTCGCATGCGTGAGAGGCTTGACGGTGGTTGT
ATAGTAATATTAAGCAACCTGGGGTATTCTAGCTCTGGAGAAGTTTTGAA
TTGCAACACATATGAAGTTGCTACTGCTTGTGCATTAGCTATTGGAGCAG
ATAAGCTGATTTGCATTATAGATGGTCCAATTTTGGATGAGAATGGACGC
CTTATTAATTTCTTGCCTCTTCAAGAAGCAGATATGTTAATCCGTCAACG
GGCTAAGCAAAGCGAGACAGCAGCTAAATATGTGAAAGCTGTTGATGAAG
AAGATGTCACTTGCCTTGGACATTATGATTCTATTGCAGTTGTCCCCTCT
TCACAGAATGGGAAGGTTCTTAATAGTACACACAATCCAACCTTTCAGAA
TGGTGTTGGTTTTGATAATGGCAATGGACTATGGTCTGGAGAGCAGGGCT
TTGCTATTGGAGGTCAGGAGCGGCTAAGTCGACTAAATGGCTACCTTTCA
GAGTTGGCTGCTGCCGCTTTTGTCTGCAGAGGTGGTGTCCAAAGAGTTCA
TTTGTTAGATGGCACTATTGGTGGGGTCTTATTATTGGAACTGTTCAAAA
GAGATGGAATGGGGACAATGGTGGCCAGTGATCTATATGAAGGTACCCGG
ATGGCGAAGGTGATGGATCTCTTAGGTATCAAGCAAATCATACAACCTTT
AGAAGAGTCTGGCACATTGGTTTGCAGGAGTGATGAGGAGCTACGTAAGG
CCATAGATTCATTTGTTGTTATGGAAAGGGAAGGTCAAATCGTTGCTTGT
GCTGCTCTTTTTCCTTTTTTCAAGGACAAGTGTGGGGAAGTTGCTTGTAT
TGCAGTTTCTCCTGAATGCCGAGGACAAGGACAGGGAGACAAATTACTTG
ATTACGTAGAGAAGAAGGCATCATCCCTTGGATTGGATATGCTTTTCCTG
CTGACAACCCGTACTGCTGATTGGTTTGTTAGGCGCGGCTTCGAAGAATG
TACCATTGACATGATACCAGATGAAAGGAGGAAAAAGATCAATCTATCCC
GTAAATCCAAGTATTACATGAAGAAGTTGCTACCGGATCGAAGTGGAATT
ACTGCTGATAGAGCATTTAAATGA
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protein sequence of Tc01v2_p006440.1

>Tc01v2_p006440.1 ID=Tc01v2_p006440.1|Name=Tc01v2_p006440.1|organism=Theobroma cacao|type=polypeptide|length=608bp
MMAASYSTARVPLFSPARTKLLSSRHGFKKGVVKLKPDLKCRAQSLKPEP
GSKRGDSVKRNVINDEDSVEETYNTVDDKQFVRWFREAWPYLWAHRGSTF
VVIISGEIVASPSLDAILKDIAFLHHLGIRFVIVPGTHVQIDKLLAERDH
EPKYVGRYRITDSESLAAAMEAAGGIRLMIEAKLSPGPSICNIRRHGDSS
RWHEVGVSVASGNFLAAKKRGVVEGVDYGATGEVKKVDVARMRERLDGGC
IVILSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIIDGPILDENGR
LINFLPLQEADMLIRQRAKQSETAAKYVKAVDEEDVTCLGHYDSIAVVPS
SQNGKVLNSTHNPTFQNGVGFDNGNGLWSGEQGFAIGGQERLSRLNGYLS
ELAAAAFVCRGGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTR
MAKVMDLLGIKQIIQPLEESGTLVCRSDEELRKAIDSFVVMEREGQIVAC
AALFPFFKDKCGEVACIAVSPECRGQGQGDKLLDYVEKKASSLGLDMLFL
LTTRTADWFVRRGFEECTIDMIPDERRKKINLSRKSKYYMKKLLPDRSGI
TADRAFK*
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