Tc01v2_t005790.1

Overview
NameTc01v2_t005790.1
Unique NameTc01v2_t005790.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1797
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 52 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productprobable indole-3-acetic acid-amido synthetase GH3.1, transcript variant X2
NoteProbable indole-3-acetic acid-amido synthetase GH3.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611224
GenbankXM_018114413.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g005790Tc01v2_g005790Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p005790.1Tc01v2_p005790.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto12901auto12901Theobroma cacaoexon
exon-auto12902auto12902Theobroma cacaoexon
exon-auto12903auto12903Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto12904auto12904Theobroma cacaoCDS
CDS-auto12905auto12905Theobroma cacaoCDS
CDS-auto12906auto12906Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t005790.1 ID=Tc01v2_t005790.1|Name=Tc01v2_t005790.1|organism=Theobroma cacao|type=mRNA|length=1797bp
ATGGCTGTTGATTCAACTCTCCCATCTCCGCTTGGCCCTCCCGCTTGTGA
GAAGGATGCCAAAGCTCTTCAATTCGTTGAAGAGATAACCAAAAATGTTG
ATTCTGTGCAAGAGAGGGTCTTGGGTGAGATCCTAAGTCGAAATGCAGAG
ACTGAGTATCTCAAACGGTACAAGCTCAATGGAGCTACGGACCGGGACAC
GTTCAAGTCTAAAATCCCCGTTGTCACTTATGAGGATCTCCAGCCTGAGA
TCCAACGCATCGCCAACGGTGACAAATCTCCTATCTTATCTGCTCACCCA
ATTTCAGAGTTTCTCACGAGTTCTGGGACTTCAGCTGGAGAAAGGAAATT
GATGCCAACAATTCATGAAGAATTGGATCGCCGTCAACTCTTGTACAGTC
TTCTCATGCCGGTGATGAACCTGTACGTTCCGGGATTGGACAAAGGGAAG
GGTCTTTATTTCTTGTTTGTGAAAGCTGAAACAAAGACTCCTGGAGGGCT
TTTGGCACGCCCTGTTCTCACAAGCTACTACAAAAGCGAACACTTTAAGA
CCAGGCCATATGACCCTTTCAACGTTTACACCAGCCCCAACGAAGCCATT
CTTTGCGCCGACTCTTTCCAGAGCATGTATAGCCAGATGCTCTGTGGGTT
GATCATGAGGGAAGAGGTTCTTCGTGTTGGTGCCGTGTTCGCCTCTGGCC
TACTCAGGGCCATTCATTTCCTTCAAATCAACTGGAAACAACTTGCTCAT
GACATCACAACGGGAACCTTGAACCCTAAAGTAACAGATGCCTCAATTCG
AGAATGTATGAGCAAAATCTTGAAGCCTAACCAGGAACTTGCTGAGTTCA
TCACCAAGGAGTGCTTGGAGGAGAACTGGGAAGGTATTATCACTAGAATT
TGGCCCAACACGAAGTACCTTGACGTGATCGTCACGGGAGCCATGGCTCA
ATATATTCCCACACTGGAATATTACAGCGGTGGCTTGCCAATGGCTTGCA
CCATGTACGCTTCGTCAGAGTGTTATTTTGGTCTTAACCTCAAGCCAATG
TGCAAGCCATCCGAAGTCACGTACACTATAATGCCAAACATGGCTTACTT
CGAGTTCTGGCCTCATGAATCATCCACTTCTGTTCTGTCTCGTGACTCGC
CTCCACGCCTTGTTGATCTCGCTGATCTAGAAGTTGGCAAAGAATACGAG
CTCATCATCACTACTTACGCGGGGTTGTGTCGTTACAGAGTCGGTGATAT
CCTTCAAGTCACCGGTTTCCACAACGCAGCTCCACAATTTCGTTTCATTA
GGAGAAAGAACGTTTTGTTGAGCATCGAGGCAGACAAGACTGATGAAGCT
GAGCTGCAAAAGGCCATGGAAAATGCTTCCGTATTGCTTAAGGAATTCAA
TACTAGCGTTGTTGAGTACACAAGCTACGCGGACACCAAAGAAATACCAG
GTCATTACGTCATTTACTGGGAATTACTCATCAAAGACCCAGCTAATGCT
CCGACGGATGCGGTTTTGAACCAATGCTGCTTACAAATGGAGGAATCATT
GAACTCTGTGTACCGTCAAAGCCGAGTTGCAGACAACTCAATCGGCCCAC
TCGAGATAAGAGTAGTGAAAGACGGCACATTCGAAGAGCTAATGGACTAC
GCAATTTCAAGGGGTGCCTCCATAAATCAATACAAAGTTCCAAGATGTGT
CAGCTTCACTCCAATCATGGAACTTCTCGACTCAAGGGTGGTTTCAAAAC
ATTTCAGTCCAGCTTTACCACACTGGACCCCAGAACGTCGTCGTTGA
back to top

protein sequence of Tc01v2_p005790.1

>Tc01v2_p005790.1 ID=Tc01v2_p005790.1|Name=Tc01v2_p005790.1|organism=Theobroma cacao|type=polypeptide|length=599bp
MAVDSTLPSPLGPPACEKDAKALQFVEEITKNVDSVQERVLGEILSRNAE
TEYLKRYKLNGATDRDTFKSKIPVVTYEDLQPEIQRIANGDKSPILSAHP
ISEFLTSSGTSAGERKLMPTIHEELDRRQLLYSLLMPVMNLYVPGLDKGK
GLYFLFVKAETKTPGGLLARPVLTSYYKSEHFKTRPYDPFNVYTSPNEAI
LCADSFQSMYSQMLCGLIMREEVLRVGAVFASGLLRAIHFLQINWKQLAH
DITTGTLNPKVTDASIRECMSKILKPNQELAEFITKECLEENWEGIITRI
WPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSECYFGLNLKPM
CKPSEVTYTIMPNMAYFEFWPHESSTSVLSRDSPPRLVDLADLEVGKEYE
LIITTYAGLCRYRVGDILQVTGFHNAAPQFRFIRRKNVLLSIEADKTDEA
ELQKAMENASVLLKEFNTSVVEYTSYADTKEIPGHYVIYWELLIKDPANA
PTDAVLNQCCLQMEESLNSVYRQSRVADNSIGPLEIRVVKDGTFEELMDY
AISRGASINQYKVPRCVSFTPIMELLDSRVVSKHFSPALPHWTPERRR*
back to top