Tc01v2_t005510.1

Overview
NameTc01v2_t005510.1
Unique NameTc01v2_t005510.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1110
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productcyclin-D3-3
NoteCyclin-D3-2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611194
GenbankXM_018121274.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g005510Tc01v2_g005510Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p005510.1Tc01v2_p005510.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto12367auto12367Theobroma cacaoexon
exon-auto12368auto12368Theobroma cacaoexon
exon-auto12369auto12369Theobroma cacaoexon
exon-auto12370auto12370Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto12371auto12371Theobroma cacaoCDS
CDS-auto12372auto12372Theobroma cacaoCDS
CDS-auto12373auto12373Theobroma cacaoCDS
CDS-auto12374auto12374Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t005510.1 ID=Tc01v2_t005510.1|Name=Tc01v2_t005510.1|organism=Theobroma cacao|type=mRNA|length=1110bp
ATGGCTCTGCAAGAAGAAGAGACTCAGCAGATTCAAAGCCCACCATTGAT
TCTTGATGGGCTGTATTGTGAAGAAGAGGATTTAGGAGAGTGTAGTTTTG
AAGAGAATGGAAGTCAAATTTGTGGTGAAACAGTGAAAAAGGAGGCATTT
TTACCTTTATTTTTCATTGAACATGACTTGTTTTGGGAAGATGATGCCTT
GCTCTCTTTAATGTCCAAAGAAAAAGAAACCCATCTTGGTTACATTGCTG
TTAACTCTGATGAGTCTTTAGTTTTGGCTCGTAAAGAAGCTTTGGAGTGG
ATTTTCAAGGTTAAGGCACTCTATGCATTCAATGCCTTGACCATAGTTCT
TGCTGTGAATTACTTTGATAGGTTCATTTCAAGCCTAAAGTTTCAAAAAG
ACAAGCCATGGATGGGACAATTAGCTGCTGTGGCTTGTTTGTCTTTGGCT
GCTAAGGTTGAGGAAACCCAAGTTCCACTTCTTTTAGACTTCCAAGTGGA
GGAATCAAAGTATGTGTTTGATTCAAAGACCATACAAAGAATGGAGCTTT
TGGTGCTGTCAACTCTTCAATGGAGGATGAACCCTGTGACGCCAATTTCC
TTCTTTGATCACATTACAAGAAGGCTTGGATTGAGGACCCATTTGCATTG
GGAGTTCCTTCGGAGGTGTGAGCGTTTGCTTCTCTTTCTCATTGCTGATT
CAAGGTTCATGCTTTATATTCCCTCTATCTTAGCTGCTGCAACAATGCTG
CATGTTATTAAAGAGGTTGAACCATGCCATTATCTTGAATATCAGAAACA
GCTTATTGGAGTACTCAAGACATGTGAGGATAAAGTAAATGCGTGCTACA
AGCTCATCTTAGGGTTATTGGAAAGCCATTGCAAAGGAAACGAAGGCCAC
AAACGCAAGCATAGATCAATACCAAGCAGCCCTAATGATGTCATTGATGT
ATCTTTTAGCTGTGATAGCTCAGATGATTCGTGGGCTATGACATCTTCGG
TCTCATCATCGCCACAGCCTCTGTTCAAAAGGAGTAGAGCACAGGACCAG
CAAATGCGGCTACCTTCACTAAATCGTATGTTTATGGATGTGCTTAGTAG
CCCTCGTTAA
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protein sequence of Tc01v2_p005510.1

>Tc01v2_p005510.1 ID=Tc01v2_p005510.1|Name=Tc01v2_p005510.1|organism=Theobroma cacao|type=polypeptide|length=370bp
MALQEEETQQIQSPPLILDGLYCEEEDLGECSFEENGSQICGETVKKEAF
LPLFFIEHDLFWEDDALLSLMSKEKETHLGYIAVNSDESLVLARKEALEW
IFKVKALYAFNALTIVLAVNYFDRFISSLKFQKDKPWMGQLAAVACLSLA
AKVEETQVPLLLDFQVEESKYVFDSKTIQRMELLVLSTLQWRMNPVTPIS
FFDHITRRLGLRTHLHWEFLRRCERLLLFLIADSRFMLYIPSILAAATML
HVIKEVEPCHYLEYQKQLIGVLKTCEDKVNACYKLILGLLESHCKGNEGH
KRKHRSIPSSPNDVIDVSFSCDSSDDSWAMTSSVSSSPQPLFKRSRAQDQ
QMRLPSLNRMFMDVLSSPR*
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