Tc01v2_t004040.1

Overview
NameTc01v2_t004040.1
Unique NameTc01v2_t004040.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length828
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
Productputative B3 domain-containing protein At5g66980
NotePutative B3 domain-containing protein At5g66980
Cross References
External references for this mRNA
DatabaseAccession
GeneID18611038
GenbankXM_018116705.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g004040Tc01v2_g004040Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p004040.1Tc01v2_p004040.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto9365auto9365Theobroma cacaoexon
exon-auto9366auto9366Theobroma cacaoexon
exon-auto9367auto9367Theobroma cacaoexon
exon-auto9368auto9368Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto9369auto9369Theobroma cacaoCDS
CDS-auto9370auto9370Theobroma cacaoCDS
CDS-auto9371auto9371Theobroma cacaoCDS
CDS-auto9372auto9372Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t004040.1 ID=Tc01v2_t004040.1|Name=Tc01v2_t004040.1|organism=Theobroma cacao|type=mRNA|length=828bp
ATGGCGAAACCCCGGAAACAATGCCATAAGTTCTTCAAAGTCTATCTCCC
TTTTTTCAATTCTCAGCAACTGAAAATACCACCTGCTTTCGTTAGGCATT
TGGATGGAACTATTCCTAAGGATGCCATGCTTAAAAATCATACTGGAAAG
CACTGGCTTGTCGATTTGGAAGAAGTTGAAGGAGGCTTGACTATGACAAA
CGGGTGGCAAGGCTTTGCAAGTGAAAACTCTTTAGAATTTGGAGACTTCC
TCATTTTCGAATATGATGGGAAATGTCTGTTTGATGTGGAAATATTTGGT
AGAAATGGATGCAACAAAGCGGCTTTATCTTCCAACATGACCACCACTCA
TGCAGTGAATGAAAAAGAGATAAAGGAGGTGGACATATGCAATGAGCCTA
CTCAAACTTGCAAGCAGAAGTATTCAGTTAAAAACTTAGGATATAAACTA
AGAAGAAATAGAGGAACAAATCTTGGGGAAGGCAAGGCACTTAACGCAGC
AACATATGTGACACCAAAAGGCCCTTATTTTGTCAGTAACATCCCTCAGT
CGATGCGGTCTGCTGTATATGTTCCTAGATCACTTCTGGCCTCATATGGA
ATTAAAATCAAGCCAGAGGTGGTGCTTCTTGATCAAAATGGGAAGAAATG
GCCAGTGATGGTCAGTTCGAGGACAGACGGTCGTGTTTTTATCCATCATG
GATGGGGTTCTTTCCGGCACGAGTACAATTTGCAGAAAGGAGATAAGTGT
GTATTTGAGTTCGTCCTTGGTAGAGGAAATATTAGCCAGAAACGACTTGT
ACAAGTTATCAGAAGACAAGCACCATAG
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protein sequence of Tc01v2_p004040.1

>Tc01v2_p004040.1 ID=Tc01v2_p004040.1|Name=Tc01v2_p004040.1|organism=Theobroma cacao|type=polypeptide|length=276bp
MAKPRKQCHKFFKVYLPFFNSQQLKIPPAFVRHLDGTIPKDAMLKNHTGK
HWLVDLEEVEGGLTMTNGWQGFASENSLEFGDFLIFEYDGKCLFDVEIFG
RNGCNKAALSSNMTTTHAVNEKEIKEVDICNEPTQTCKQKYSVKNLGYKL
RRNRGTNLGEGKALNAATYVTPKGPYFVSNIPQSMRSAVYVPRSLLASYG
IKIKPEVVLLDQNGKKWPVMVSSRTDGRVFIHHGWGSFRHEYNLQKGDKC
VFEFVLGRGNISQKRLVQVIRRQAP*
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