Tc01v2_t003390.1

Overview
NameTc01v2_t003390.1
Unique NameTc01v2_t003390.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2217
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
ProductDNA-directed RNA polymerase III subunit RPC5, transcript variant X1
NoteTranscription regulators,zinc ion binding, putative isoform 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610966
GenbankXM_018114378.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g003390Tc01v2_g003390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p003390.1Tc01v2_p003390.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto7959auto7959Theobroma cacaoexon
exon-auto7960auto7960Theobroma cacaoexon
exon-auto7961auto7961Theobroma cacaoexon
exon-auto7962auto7962Theobroma cacaoexon
exon-auto7963auto7963Theobroma cacaoexon
exon-auto7964auto7964Theobroma cacaoexon
exon-auto7965auto7965Theobroma cacaoexon
exon-auto7966auto7966Theobroma cacaoexon
exon-auto7967auto7967Theobroma cacaoexon
exon-auto7968auto7968Theobroma cacaoexon
exon-auto7969auto7969Theobroma cacaoexon
exon-auto7970auto7970Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto7971auto7971Theobroma cacaoCDS
CDS-auto7972auto7972Theobroma cacaoCDS
CDS-auto7973auto7973Theobroma cacaoCDS
CDS-auto7974auto7974Theobroma cacaoCDS
CDS-auto7975auto7975Theobroma cacaoCDS
CDS-auto7976auto7976Theobroma cacaoCDS
CDS-auto7977auto7977Theobroma cacaoCDS
CDS-auto7978auto7978Theobroma cacaoCDS
CDS-auto7979auto7979Theobroma cacaoCDS
CDS-auto7980auto7980Theobroma cacaoCDS
CDS-auto7981auto7981Theobroma cacaoCDS
CDS-auto7982auto7982Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t003390.1 ID=Tc01v2_t003390.1|Name=Tc01v2_t003390.1|organism=Theobroma cacao|type=mRNA|length=2217bp
ATGGACCTGGACGATCTAGGTGAGCTCGACGGTCCTAGCCAAGTTAATAC
CCGAACTACCAAATTCGCGCCCAAATCCTCCAAATTCGCACCCAGGCTAA
AACCAAACTTCAAGCCGAAACCCGAACCGTCATCCAAACAAGAGCCCCTC
AACTCCGGACCGAAACCGGAACCACCACCACCACCACCACCACCGGAATC
AATTTCAAGGAAGAAAGAAAACGAAGAAGAGGATATAAAGCCGCCGGTGA
TTGCTGAGACGAAAACCGAACAATCGTTCTCGAATGGCGCGGTGAAGATG
GAGATTGAAGAGGAAGCAAAAGAGGATGTGATTATGAATGAAGGAAACAG
AGAAGAAGAAGATATGGTTGTTCGCGAAATCGATGTATTCTTCACTCCCT
CAATCGACGCCAACACTCAGCTATATGTTCTGCAATATCCTTTAAGGCCT
TGCTGGCGACCATACGAATTAGATGAACGTTGCGAGGAGGTAAGAGTGAA
ACCTGCGAGTGGGGAAGTGGAAATGGACTTGGCGGTCGATGTTGATTCCA
ACAATTATGACAGTGAACGTGCTAGCAGATTGAAGATGACAAAGCAGACT
TTATCTTCTTCATGGCTGCCACCTCGCACAACTGGCTATGCTGTTGGAGT
TTTAATGGGCGATAAGTTGCACCTGAATCCTATTCATGCAGTTGTTCAGC
TCCGACCATCGATGTGTCATCTCAAGCCCAGTGTCTCAAAAAGAAAGAAC
GCAGCTGCAGCTGATGCAGAAGTTACTGTTAAAGTAGAAGAACCTAATGA
TGGGAAAGCAGCTGGTTCATCAACCAAGCAGAACAAGAGAATGCAGTCCT
CAACTGAGCAAAAAGCAGATGATAAAGAGTGTTGGGTTCCGCTCAAGTAT
CATAGCTCCAAGAATGATTTCTCTGCTCAGTATCTGCAGAGAATGATGGC
AGAAGAAAGCTGTCCAATTCAGTTTACCATGAGCCCGTACGATTATGTTG
ACTCTTTGTGTCCTGGAGCAAGCAACAACAATAAAGCCCAAGGTCCATCT
AGAAGGTTGTTGCTTTCAATTCCGCTGGAAGAACGTTTGAAGAAATTACT
GTCTGAGGGACCTCCATTTCACCGATTCAGTGCTCTTAAGCACTTTGCTC
CGGATGCCTCAATTGAAGATATATTTGAAGTCCTTCAGAAGCATGCTCTA
TTAGTGCAAGGACTCTGGGTTCCCAAGAGTTCATTATTATTTCCGGAGGA
TCCCTATAAATCTTTAGCCAGAGACTATGTGCTTCTTTTATTTAGCAAGA
ATCCAATAATAAGCTTAGCACAAGTACATGCCCTTTCCCCAAGTCGCAAA
GAAGAGGTGAAAGGCTTCCTGAAAATTTTAGCCATAGAAAGGCCATCCTT
CAAAGATTGGAAGTTGAAAGAGAATGCTGATGAAGGATTCAAAAAACTCT
ATCCAGATATTGTGAAGAATCAGGAACAGATTTGGAGAGCTGGTGAAGAT
AATGTAATTAATCATATTTGTCGAGGTGCAAAAGGTGGCCCTAGTAGAAC
AAAGCCTGGCACAGTTATTAAGCCTGAAAAAGCAATGAATTCTGATAAAG
GTGTGCGAAGGGTTGCACCTGCAGTGCAAGCTGGGAGGACAATGTCCGAT
GAAACTCGAGAAGCTATACCAAAGGCCCTGAAAAAGGTTTTTCAAACTCA
CAAAGTTTGCAGCTTGCAACTGATTCGCAAAGGTCTAAGGGATTTGGCTC
TTTCCCAGTCTACCCTTCCCAAGGCAGATGCTAGAATGGTAGTTAAGGCA
GCATATGGTGCTGATGCACCTGAACATGAGCTCCAGGAAGTCGTAAGTGA
AGTTGCAGTAGAGCTTCATGGTGGTCTTTTTGTTCTGAGGTCATCCCCAG
AGCATCCAGAATATGATCCATTGAGGTTACATAAATATGTTCAATTAGTA
TTTAAATGGGAAGAGATGTTTATGGTCTCTATGTTCTTTTTACAAAATCC
CTCTTTTTCATCAGAATTGTTCTTTCCATGCAGGGAAGTTGTGATTAATC
TTCTTCGTGTCAAAGGGAAGCTTAAGAAGGCTGATGTCTCAGCTGCTGCC
CTTCTTAGTCTAAAGAGGGAAATTTCTAATAATGAGTATAACAAGGTCAT
GAGCGATTTTTGTGAGTATAAAAGCAGTTGGTGGGTCTTGAAAAGTGGTG
ATGGAAAGCCAAGCTAA
back to top

protein sequence of Tc01v2_p003390.1

>Tc01v2_p003390.1 ID=Tc01v2_p003390.1|Name=Tc01v2_p003390.1|organism=Theobroma cacao|type=polypeptide|length=739bp
MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKPKPEPSSKQEPL
NSGPKPEPPPPPPPPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKM
EIEEEAKEDVIMNEGNREEEDMVVREIDVFFTPSIDANTQLYVLQYPLRP
CWRPYELDERCEEVRVKPASGEVEMDLAVDVDSNNYDSERASRLKMTKQT
LSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRKN
AAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKY
HSSKNDFSAQYLQRMMAEESCPIQFTMSPYDYVDSLCPGASNNNKAQGPS
RRLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHAL
LVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRK
EEVKGFLKILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGED
NVINHICRGAKGGPSRTKPGTVIKPEKAMNSDKGVRRVAPAVQAGRTMSD
ETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKA
AYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLRLHKYVQLV
FKWEEMFMVSMFFLQNPSFSSELFFPCREVVINLLRVKGKLKKADVSAAA
LLSLKREISNNEYNKVMSDFCEYKSSWWVLKSGDGKPS*
back to top