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Properties
Property Name | Value |
Model evidence | Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns |
Product | DNA-directed RNA polymerase III subunit RPC5, transcript variant X1 |
Note | Transcription regulators,zinc ion binding, putative isoform 3 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc01v2_t003390.1 ID=Tc01v2_t003390.1|Name=Tc01v2_t003390.1|organism=Theobroma cacao|type=mRNA|length=2217bp ATGGACCTGGACGATCTAGGTGAGCTCGACGGTCCTAGCCAAGTTAATAC CCGAACTACCAAATTCGCGCCCAAATCCTCCAAATTCGCACCCAGGCTAA AACCAAACTTCAAGCCGAAACCCGAACCGTCATCCAAACAAGAGCCCCTC AACTCCGGACCGAAACCGGAACCACCACCACCACCACCACCACCGGAATC AATTTCAAGGAAGAAAGAAAACGAAGAAGAGGATATAAAGCCGCCGGTGA TTGCTGAGACGAAAACCGAACAATCGTTCTCGAATGGCGCGGTGAAGATG GAGATTGAAGAGGAAGCAAAAGAGGATGTGATTATGAATGAAGGAAACAG AGAAGAAGAAGATATGGTTGTTCGCGAAATCGATGTATTCTTCACTCCCT CAATCGACGCCAACACTCAGCTATATGTTCTGCAATATCCTTTAAGGCCT TGCTGGCGACCATACGAATTAGATGAACGTTGCGAGGAGGTAAGAGTGAA ACCTGCGAGTGGGGAAGTGGAAATGGACTTGGCGGTCGATGTTGATTCCA ACAATTATGACAGTGAACGTGCTAGCAGATTGAAGATGACAAAGCAGACT TTATCTTCTTCATGGCTGCCACCTCGCACAACTGGCTATGCTGTTGGAGT TTTAATGGGCGATAAGTTGCACCTGAATCCTATTCATGCAGTTGTTCAGC TCCGACCATCGATGTGTCATCTCAAGCCCAGTGTCTCAAAAAGAAAGAAC GCAGCTGCAGCTGATGCAGAAGTTACTGTTAAAGTAGAAGAACCTAATGA TGGGAAAGCAGCTGGTTCATCAACCAAGCAGAACAAGAGAATGCAGTCCT CAACTGAGCAAAAAGCAGATGATAAAGAGTGTTGGGTTCCGCTCAAGTAT CATAGCTCCAAGAATGATTTCTCTGCTCAGTATCTGCAGAGAATGATGGC AGAAGAAAGCTGTCCAATTCAGTTTACCATGAGCCCGTACGATTATGTTG ACTCTTTGTGTCCTGGAGCAAGCAACAACAATAAAGCCCAAGGTCCATCT AGAAGGTTGTTGCTTTCAATTCCGCTGGAAGAACGTTTGAAGAAATTACT GTCTGAGGGACCTCCATTTCACCGATTCAGTGCTCTTAAGCACTTTGCTC CGGATGCCTCAATTGAAGATATATTTGAAGTCCTTCAGAAGCATGCTCTA TTAGTGCAAGGACTCTGGGTTCCCAAGAGTTCATTATTATTTCCGGAGGA TCCCTATAAATCTTTAGCCAGAGACTATGTGCTTCTTTTATTTAGCAAGA ATCCAATAATAAGCTTAGCACAAGTACATGCCCTTTCCCCAAGTCGCAAA GAAGAGGTGAAAGGCTTCCTGAAAATTTTAGCCATAGAAAGGCCATCCTT CAAAGATTGGAAGTTGAAAGAGAATGCTGATGAAGGATTCAAAAAACTCT ATCCAGATATTGTGAAGAATCAGGAACAGATTTGGAGAGCTGGTGAAGAT AATGTAATTAATCATATTTGTCGAGGTGCAAAAGGTGGCCCTAGTAGAAC AAAGCCTGGCACAGTTATTAAGCCTGAAAAAGCAATGAATTCTGATAAAG GTGTGCGAAGGGTTGCACCTGCAGTGCAAGCTGGGAGGACAATGTCCGAT GAAACTCGAGAAGCTATACCAAAGGCCCTGAAAAAGGTTTTTCAAACTCA CAAAGTTTGCAGCTTGCAACTGATTCGCAAAGGTCTAAGGGATTTGGCTC TTTCCCAGTCTACCCTTCCCAAGGCAGATGCTAGAATGGTAGTTAAGGCA GCATATGGTGCTGATGCACCTGAACATGAGCTCCAGGAAGTCGTAAGTGA AGTTGCAGTAGAGCTTCATGGTGGTCTTTTTGTTCTGAGGTCATCCCCAG AGCATCCAGAATATGATCCATTGAGGTTACATAAATATGTTCAATTAGTA TTTAAATGGGAAGAGATGTTTATGGTCTCTATGTTCTTTTTACAAAATCC CTCTTTTTCATCAGAATTGTTCTTTCCATGCAGGGAAGTTGTGATTAATC TTCTTCGTGTCAAAGGGAAGCTTAAGAAGGCTGATGTCTCAGCTGCTGCC CTTCTTAGTCTAAAGAGGGAAATTTCTAATAATGAGTATAACAAGGTCAT GAGCGATTTTTGTGAGTATAAAAGCAGTTGGTGGGTCTTGAAAAGTGGTG ATGGAAAGCCAAGCTAA back to topprotein sequence of Tc01v2_p003390.1 >Tc01v2_p003390.1 ID=Tc01v2_p003390.1|Name=Tc01v2_p003390.1|organism=Theobroma cacao|type=polypeptide|length=739bp
MDLDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKPKPEPSSKQEPL NSGPKPEPPPPPPPPESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKM EIEEEAKEDVIMNEGNREEEDMVVREIDVFFTPSIDANTQLYVLQYPLRP CWRPYELDERCEEVRVKPASGEVEMDLAVDVDSNNYDSERASRLKMTKQT LSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRKN AAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKY HSSKNDFSAQYLQRMMAEESCPIQFTMSPYDYVDSLCPGASNNNKAQGPS RRLLLSIPLEERLKKLLSEGPPFHRFSALKHFAPDASIEDIFEVLQKHAL LVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRK EEVKGFLKILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGED NVINHICRGAKGGPSRTKPGTVIKPEKAMNSDKGVRRVAPAVQAGRTMSD ETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKA AYGADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLRLHKYVQLV FKWEEMFMVSMFFLQNPSFSSELFFPCREVVINLLRVKGKLKKADVSAAA LLSLKREISNNEYNKVMSDFCEYKSSWWVLKSGDGKPS* back to top
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