Tc01v2_t003290.1

Overview
NameTc01v2_t003290.1
Unique NameTc01v2_t003290.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1581
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productplant-specific TFIIB-related protein 1
NotePlant-specific TFIIB-related protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610956
GenbankXM_007046917.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g003290Tc01v2_g003290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p003290.1Tc01v2_p003290.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto7782auto7782Theobroma cacaoexon
exon-auto7783auto7783Theobroma cacaoexon
exon-auto7784auto7784Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto7785auto7785Theobroma cacaoCDS
CDS-auto7786auto7786Theobroma cacaoCDS
CDS-auto7787auto7787Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t003290.1 ID=Tc01v2_t003290.1|Name=Tc01v2_t003290.1|organism=Theobroma cacao|type=mRNA|length=1581bp
ATGAAGTGTCCATATTGCTCGGCGGCGCAAGGTCGGTGCGCCACGACGAC
CACGGGCCGGTCTATAACAGAGTGCACCTCGTGCGGTCGAGTCGTGGAAG
AACGCCAATTCCAGAACCACCACCTCTTCCACGTGCGTGCTCAAGACACC
CCTCTCTGCCTTGTCACCTCCGAAATCCCCGCTCTCGCTTCCGCCTTCCA
AGTCGACGAAGACGACCCGTTTGAGCCCACGGGGTTTATCACGGCGTTTT
CCACATGGTCCCTCGAGCCCAGCCCACTCTTCCTCCGCTCCTCTCTCTCC
TTCTCCGGCCACCTCGCCGAGCTCGAACGGACTCTGGAGCTTTCTTCGTC
TTCGGCGCCATCGTCTACGTCATCGTCGACGGTTGTGGTGGATAATTTGA
GGGCGTATATGCAGATTATTGACGTGGCGTCGATTTTGGGGTTGGATTGC
GACATATCGGATCACGCGTTTCAGTTGTTTAGGGATTGTTGTTCGGCCAC
TTGTTTGAGGAACCGGAGTGTTGAGGCGCTTGCTACTGCTGCTCTTGTTC
AGGCCATTAGGGAAGCTCAAGAGCCCCGAACCCTCCAGGAAATCTCCATT
GCTGCCAATGTACCGCAGAAAGAGATAGGCAAGTACATAAAGATATTGGG
AGAAGCTCTACAACTAAGTCAGCCTATCAATAGTAATTCAATATCAGTCC
ATATGCCAAGATTTTGCACTCTCCTTCAGCTTAACAAATCTGCACAGGAG
CTGGCAACTCATATTGGAGAAGTTGTTATCAACAAATGCTTCTGCACTCG
GAGGAATCCAATCAGCATCTCTGCAGCTGCTATATATCTGGCATGCCAAT
TAGAAGACAAACGCAAGACACAGGCTGAGATTTGTAAGGTGACAGGTCTC
ACGGAGGTCACCCTTCGAAAAGTCTACAAGGAACTATTAGAAAATTGGGA
TGATCTACTTCCATCAAATTATACTCCGGCTGTCCCTCCAGAGAAAGCAT
TTCCCACAACTACAATTGCCACAGGCCGATCTTCAGGGCCTAGAGTTGAT
CCAATTGACCTTTCTTCAGTGGAGAGAGATAAGCAGCAAGACTCCAAACC
AAATAAGCAGATTGAAACGTTGGAACCAGGCCTTCAAGCTAGAGGCAAGG
ATGATGCAGAAAGCAACGGCAACCCTTCTGGAACCCATACTGCTATGTTG
AACCGGCCACCACATTACAGGCAGCCCTGGCTTCAGTTTGGTCCACCTGG
TGTTTGGACAGCAGGAGATAGAAACCAAACCATCGTTCGAGCAGACATCA
ACGAGGCACAAACGAGCTGTCCAGAGTTGGAGCAAAAGGGGGATAAGCCC
AAGATCGATAGCAAGGGTGCTACTAGTTCTCTAAGGCCAAGCCAGTTCTC
AACCACTCCAGCTTCAAATGTGAGTACAATCACTTGGCCATTTCGTTCAC
CACCCTCATCAGGGCCTACTCCGAACATGCCAATTGTGCATCCGCCAAAG
TTGCCACCAGGTTATGCAGAACTCAAAGGACCGGGGAGCCAAAATGGAAG
TAAAAATACCAATCAGGGTGGAGACTCATAA
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protein sequence of Tc01v2_p003290.1

>Tc01v2_p003290.1 ID=Tc01v2_p003290.1|Name=Tc01v2_p003290.1|organism=Theobroma cacao|type=polypeptide|length=527bp
MKCPYCSAAQGRCATTTTGRSITECTSCGRVVEERQFQNHHLFHVRAQDT
PLCLVTSEIPALASAFQVDEDDPFEPTGFITAFSTWSLEPSPLFLRSSLS
FSGHLAELERTLELSSSSAPSSTSSSTVVVDNLRAYMQIIDVASILGLDC
DISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISI
AANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQE
LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTIATGRSSGPRVD
PIDLSSVERDKQQDSKPNKQIETLEPGLQARGKDDAESNGNPSGTHTAML
NRPPHYRQPWLQFGPPGVWTAGDRNQTIVRADINEAQTSCPELEQKGDKP
KIDSKGATSSLRPSQFSTTPASNVSTITWPFRSPPSSGPTPNMPIVHPPK
LPPGYAELKGPGSQNGSKNTNQGGDS*
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