Tc01v2_t001540.1

Overview
NameTc01v2_t001540.1
Unique NameTc01v2_t001540.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1851
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
ProductDNA-(apurinic or apyrimidinic site) lyase 2
NoteDNA-(apurinic or apyrimidinic site) lyase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610767
GenbankXM_007046629.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g001540Tc01v2_g001540Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p001540.1Tc01v2_p001540.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto4216auto4216Theobroma cacaoexon
exon-auto4217auto4217Theobroma cacaoexon
exon-auto4218auto4218Theobroma cacaoexon
exon-auto4219auto4219Theobroma cacaoexon
exon-auto4220auto4220Theobroma cacaoexon
exon-auto4221auto4221Theobroma cacaoexon
exon-auto4222auto4222Theobroma cacaoexon
exon-auto4223auto4223Theobroma cacaoexon
exon-auto4224auto4224Theobroma cacaoexon
exon-auto4225auto4225Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto4226auto4226Theobroma cacaoCDS
CDS-auto4227auto4227Theobroma cacaoCDS
CDS-auto4228auto4228Theobroma cacaoCDS
CDS-auto4229auto4229Theobroma cacaoCDS
CDS-auto4230auto4230Theobroma cacaoCDS
CDS-auto4231auto4231Theobroma cacaoCDS
CDS-auto4232auto4232Theobroma cacaoCDS
CDS-auto4233auto4233Theobroma cacaoCDS
CDS-auto4234auto4234Theobroma cacaoCDS
CDS-auto4235auto4235Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t001540.1 ID=Tc01v2_t001540.1|Name=Tc01v2_t001540.1|organism=Theobroma cacao|type=mRNA|length=1851bp
ATGAAGATAGTAACTTACAACGTCAATGGTCTGAGGCAAAGAATCTCACA
GTTCGGGTCTCTTTCCAAATTGCTCAATTCCTTCGATGCTGATATAATCT
GCATCCAGGAAACGAAATTGAGAAGGCAAGAATTAACGGCCGATTTGGCA
ATAGCCGATGGCTACGAGTCTTTCTTTTCATGCACTCGCACCTCCGATAA
AGGCCGAACTGGGTACTCCGGTGTGGCTACATTTTGTCGTGTGAAGTCGG
CGTTCTCGAGCGTAGAAGCGGCATTGCCCATTGCAGCAGAGGAAGGGTTC
ACAGGCCTTCTAGGATGTTCTAGAAAAGACGAAGCGGCGGCTTCCGTAGC
TGAAGGGCTGGAGGAGTTCTCAAGAGAGGAACTTCTCAAGGTTGATAGCG
AGGGGCGGTGTATTATCACGGATCATGGTCATTTTGTTCTCTTCAACTTG
TATGGACCCCGAGCAGAGAGTGATGATGCTGATAGGATTCAATTCAAGTT
CAATTTTTTAAAGATATTACAGAAAAGATGGGAGTCTCTGTTGCGTCGCG
GAAGGAGGATTTTTGTTCTTGGTGATCTTAACATAGCTCCTTGTGCTATT
GATCGTTGTGATGCAGGACCAGATTTTGAGAAGAATGAGTTCAGGACATG
GTTTAGATCCATGCTAGTGGAATCTGGAGGTCATTTCTTTGATGTTTTCA
GGGCAAAAAATCCCAACAGAAGGGAAGCATTTACATGTTGGCCTTCAAAT
ACTGGTGCTGAACAATTCAATTATGGGACAAGAATTGATCATATTCTCTG
TGCTGGATCTTGCTTACATGAGGAGCATGATGTTGACGGACATAATTTGG
TAACCTGCCATGTAGAGGAGTGCAACATTTTGACAGAGTACAAGCGGTGG
AAACCTGGAAATGCACCAAGGTGGAAAGGAGGGTGGAACATTAAATTAGA
AGGTTCAGACCATGCTCCTGTTTATACAAGCTTGGTGGAAATTCCTGATG
TCTCACAGCATAGCACTCCATCTTTAGCTGCTAGATATCTGCCCATGATT
CATGGTCTGCAAACTCTTGTGTCAGTTTTCAAGAGAAGGCAGGCTGCTAA
GCAAGTCCAATCCCATTTAGTATCAAGTTCATTTTCTGATGAAAATATCA
TGGTCGGAGGTTGCAGTCATAGTGTCAACAGGTCGATCACAAATTGCAAT
GTACCTGGAACCTATACATCCTGCTGTTCATTGGACGAGGACTGTGAACA
TACCATCCCACAAGTTGATGAGCAGTCTGAAGATCTCACTGAGGAGGTTG
CTTGTAACACTTCAATTGCATTCAACAGAGAATATGTCAGTTCAATGCCT
AACAAAGAAACCAAGAAAAGAGCAAGAAAGAGTCAACAGCTCTCCTTGAG
ATCATTTTTTCAGAAAATTCCAAACCAAGATAATACTGTTGACAGTTCTA
CTACTGATACTTCAACCAACCAGCCTGGTGTTGTAGATTCTAATGATCAG
TCCCAGGAAGCTCCTGTGATGGATTATCTTGGAAGCAGTCCAAAGCAGAA
TGACACGAAATTGTGTGCATCCTCACAGGGTCAAGAAGCACAAGATGGGA
ATTGTTATTTGGAGAAGGAGAGGAATAACGTTGCTTTAGTGGAGTGGCAA
AGGATACAACAACTCATGCAGAATAGCATACCTCTTTGCAAGGGCCATAG
AGAACCTTGTGTTTCACGAGTAGTGAAGAAACCAGGTCCTACTTTTGGTC
ATAGATTCTATGTGTGTGCTCGAGCTGAGGGTCCTTCTTCTAACCCTGAA
GCAAATTGTGGTTACTTCAGATGGGCTTCAGTGAAATCTCGGCCAAAATG
A
back to top

protein sequence of Tc01v2_p001540.1

>Tc01v2_p001540.1 ID=Tc01v2_p001540.1|Name=Tc01v2_p001540.1|organism=Theobroma cacao|type=polypeptide|length=617bp
MKIVTYNVNGLRQRISQFGSLSKLLNSFDADIICIQETKLRRQELTADLA
IADGYESFFSCTRTSDKGRTGYSGVATFCRVKSAFSSVEAALPIAAEEGF
TGLLGCSRKDEAAASVAEGLEEFSREELLKVDSEGRCIITDHGHFVLFNL
YGPRAESDDADRIQFKFNFLKILQKRWESLLRRGRRIFVLGDLNIAPCAI
DRCDAGPDFEKNEFRTWFRSMLVESGGHFFDVFRAKNPNRREAFTCWPSN
TGAEQFNYGTRIDHILCAGSCLHEEHDVDGHNLVTCHVEECNILTEYKRW
KPGNAPRWKGGWNIKLEGSDHAPVYTSLVEIPDVSQHSTPSLAARYLPMI
HGLQTLVSVFKRRQAAKQVQSHLVSSSFSDENIMVGGCSHSVNRSITNCN
VPGTYTSCCSLDEDCEHTIPQVDEQSEDLTEEVACNTSIAFNREYVSSMP
NKETKKRARKSQQLSLRSFFQKIPNQDNTVDSSTTDTSTNQPGVVDSNDQ
SQEAPVMDYLGSSPKQNDTKLCASSQGQEAQDGNCYLEKERNNVALVEWQ
RIQQLMQNSIPLCKGHREPCVSRVVKKPGPTFGHRFYVCARAEGPSSNPE
ANCGYFRWASVKSRPK*
back to top