Tc01v2_t001240.1

Overview
NameTc01v2_t001240.1
Unique NameTc01v2_t001240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length594
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 12 ESTs, 114 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productrac-like GTP-binding protein RHO1
NoteRac-like GTP-binding protein RHO1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610734
GenbankXM_007046576.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g001240Tc01v2_g001240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p001240.1Tc01v2_p001240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto3612auto3612Theobroma cacaoexon
exon-auto3613auto3613Theobroma cacaoexon
exon-auto3614auto3614Theobroma cacaoexon
exon-auto3615auto3615Theobroma cacaoexon
exon-auto3616auto3616Theobroma cacaoexon
exon-auto3617auto3617Theobroma cacaoexon
exon-auto3618auto3618Theobroma cacaoexon
exon-auto3619auto3619Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto3620auto3620Theobroma cacaoCDS
CDS-auto3621auto3621Theobroma cacaoCDS
CDS-auto3622auto3622Theobroma cacaoCDS
CDS-auto3623auto3623Theobroma cacaoCDS
CDS-auto3624auto3624Theobroma cacaoCDS
CDS-auto3625auto3625Theobroma cacaoCDS
CDS-auto3626auto3626Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t001240.1 ID=Tc01v2_t001240.1|Name=Tc01v2_t001240.1|organism=Theobroma cacao|type=mRNA|length=594bp
ATGAGCGCTTCGAGGTTTATAAAGTGCGTGACTGTTGGTGATGGTGCTGT
TGGCAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACTG
ATTATGTGCCAACTGTTTTCGACAATTTCAGTGCTAATGTTGTTGTCAAT
GGGAGTACTGTTAATCTGGGGTTATGGGATACTGCAGGACAGGAGGACTA
TAACAGACTTAGACCTTTGAGTTATCGCGGGGCAGATGTGTTCATATTGG
CATTCTCTCTTATTAGCAAGGCCAGTTATGAAAATGTCTCCAAAAAGTGG
ATTCCGGAGTTGAAACATTATGCCCCTGGTGTTCCAATAGTTCTTGTTGG
GACTAAGCTTGATCTTCGGGACGATAAGCAGTTCTTTATTGATCATCCTG
GAGCTGTGCCCATTTCTACAGCCCAGGGAGAGGAGCTGAGGAAGCTGATT
GGTTCACCTGCTTATATTGAGTGCAGTTCCAAAACGCAGCAGAATGTGAA
GGCAGTTTTTGATGCAGCCATCCGAGTTGTCCTTCAACCACCAAAGCAGA
AAAAAAAGAAGAGCAAAGCACAGAAGGCCTGCTCCATATTGTGA
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protein sequence of Tc01v2_p001240.1

>Tc01v2_p001240.1 ID=Tc01v2_p001240.1|Name=Tc01v2_p001240.1|organism=Theobroma cacao|type=polypeptide|length=198bp
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN
GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW
IPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI
GSPAYIECSSKTQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL*
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