Tc01v2_t000990.1

Overview
NameTc01v2_t000990.1
Unique NameTc01v2_t000990.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2703
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 15 ESTs, 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productaconitate hydratase 1
NoteAconitate hydratase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610706
GenbankXM_007046535.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000990Tc01v2_g000990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000990.1Tc01v2_p000990.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto3104auto3104Theobroma cacaoexon
exon-auto3105auto3105Theobroma cacaoexon
exon-auto3106auto3106Theobroma cacaoexon
exon-auto3107auto3107Theobroma cacaoexon
exon-auto3108auto3108Theobroma cacaoexon
exon-auto3109auto3109Theobroma cacaoexon
exon-auto3110auto3110Theobroma cacaoexon
exon-auto3111auto3111Theobroma cacaoexon
exon-auto3112auto3112Theobroma cacaoexon
exon-auto3113auto3113Theobroma cacaoexon
exon-auto3114auto3114Theobroma cacaoexon
exon-auto3115auto3115Theobroma cacaoexon
exon-auto3116auto3116Theobroma cacaoexon
exon-auto3117auto3117Theobroma cacaoexon
exon-auto3118auto3118Theobroma cacaoexon
exon-auto3119auto3119Theobroma cacaoexon
exon-auto3120auto3120Theobroma cacaoexon
exon-auto3121auto3121Theobroma cacaoexon
exon-auto3122auto3122Theobroma cacaoexon
exon-auto3123auto3123Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto3124auto3124Theobroma cacaoCDS
CDS-auto3125auto3125Theobroma cacaoCDS
CDS-auto3126auto3126Theobroma cacaoCDS
CDS-auto3127auto3127Theobroma cacaoCDS
CDS-auto3128auto3128Theobroma cacaoCDS
CDS-auto3129auto3129Theobroma cacaoCDS
CDS-auto3130auto3130Theobroma cacaoCDS
CDS-auto3131auto3131Theobroma cacaoCDS
CDS-auto3132auto3132Theobroma cacaoCDS
CDS-auto3133auto3133Theobroma cacaoCDS
CDS-auto3134auto3134Theobroma cacaoCDS
CDS-auto3135auto3135Theobroma cacaoCDS
CDS-auto3136auto3136Theobroma cacaoCDS
CDS-auto3137auto3137Theobroma cacaoCDS
CDS-auto3138auto3138Theobroma cacaoCDS
CDS-auto3139auto3139Theobroma cacaoCDS
CDS-auto3140auto3140Theobroma cacaoCDS
CDS-auto3141auto3141Theobroma cacaoCDS
CDS-auto3142auto3142Theobroma cacaoCDS
CDS-auto3143auto3143Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000990.1 ID=Tc01v2_t000990.1|Name=Tc01v2_t000990.1|organism=Theobroma cacao|type=mRNA|length=2703bp
ATGGCTACAGAGAATCCTTTCAACAGCATTTTGAAGACTTTGGAGAAGCC
AGGTGGTGGTGAATTCGGGAAATACTATAGTTTACCTGCTCTCGATGATC
CAAGGATCGATAAACTTCCTTACTCTATTAAAATACTTCTTGAATCCGCG
ATACGTAACTGCGATGAGTTTCAAGTTAAGAGTAAGGATGTCGAGAAGAT
CATTGATTGGGAGAACACATCTCCCAAACAAGTTGAGATTCCGTTTAAGC
CAGCTCGAGTGCTGCTTCAGGATTTTACCGGTGTTCCTGCTGTTGTTGAT
CTTGCCTGCATGCGAGATGCTATGAACAATCTTGGTGGTAATTCTAATAA
AATTAATCCATTGGTTCCTGTAGATCTTGTTATTGATCACTCAGTTCAGG
TTGATGTGGCAAGGTCAGAAAATGCAGTGCAGGCAAACATGGAACTTGAA
TTCAAACGAAACAAAGAAAGATTTGCTTTTCTCAAGTGGGGTTCAAATGC
ATTCGATAACATGCTTGTTGTTCCTCCTGGATCAGGAATAGTACATCAGG
TCAATTTAGAATATCTTGGCAGAGTCGTTTTCAACACAAATGGCGTGCTT
TACCCTGATAGTGTTGTTGGAACAGACTCACATACAACTATGATTGATGG
ATTGGGTGTTGCTGGCTGGGGTGTTGGTGGTATAGAAGCAGAAGCTGCCA
TGCTTGGCCAGCCCATGAGCATGGTCTTGCCAGGTGTTGTTGGGTTTAAA
CTATTAGGAAAATTGAGGAATGGTGTGACGGCTACTGATTTGGTGTTGAC
TGTTACGCAAATGCTGAGGAAGCATGGGGTTGTTGGCAAGTTTGTGGAAT
TCTATGGGGAAGGCATGAGGGAATTGTCCTTAGCAGACCGTGCCACTATT
GCCAACATGTCTCCTGAGTATGGTGCAACCATGGGATTTTTCCCTGTGGA
TCATGTTACTCTGCAGTATCTACGACTGACTGGCAGAAGTGACGAGACTA
TTGCTATGATAGAATCCTATTTACGGGCCAATAAGATGTTTGTGGACTAC
AGTGAGCCTCAGACTGAGAAAGTGTACTCTACGTACTTGGACTTGAAACT
TGAGGATGTTGAACCCTGTATATCAGGGCCCAAGAGGCCACATGATCGAG
TTCCTTTGAAAGAAATGAAAGCTGATTGGCACGCATGCTTAGACAACAGA
GTTGGATTTAAGGGATTTGCTATACCAAAGGAATCTCAGAACAAGGTTGC
AAAGTTTTCATTCCGTGGGACTCCAGCCGAGCTGAGGCATGGAGATGTGG
TTATAGCTGCTATTACTAGTTGCACAAATACTTCGAATCCTAGTGTGATG
CTAGGAGCTGCTCTGGTTGCAAAGAAGGCTTGTGAATTAGGATTGGAGGT
CAAGCCATGGATTAAGACAAGTCTTGCTCCAGGCTCTGGGGTTGTAACCA
AATACTTGCAAAAGAGTGGCTTGCAGAAGTATTTGAATCAGTTAGGATTT
CATATTGTTGGGTATGGATGCACTACGTGCATTGGGAATTCAGGAGATAT
TGATGAATCTGTGGCATCAGCTATCTCTGAAAATGATATGGTGGCTGCAG
CTGTGTTGTCTGGAAACAGAAACTTTGAAGGACGCGTACATCCTTTGACA
AGGGCTAATTATCTTGCTTCTCCTCCCCTCGTTGTTGCCTATGCTCTTGC
TGGCACTGTGGATATTGATTTCGTGACAGAGCCCATTGGTACAGCGAAAG
ATGGAAAAGAGATCTTTTTCAAGGACATTTGGCCTTCTAGTGAAGAAGTA
GCTACTGTTGTACACTCAAGTGTGCTGCCTGATATGTTCAAAGCTACATA
TGAAGCAATCACCAAAGGAAATCCCATGTGGAATCAATTATCTGTACCTT
CCAGCACCCTTTACTCCTGGGACCCAACATCAACTTACATCCATGAGCCA
CCATACTTTAAAGGCATGACCATGTCGCCTCCAGGTCCGCATGGAGTGAA
GGATGCTTGCTGCTTGCTTAACTTGGGAGACAGTATCACAACTGATCACA
TCTCCCCAGCTGGTAGCATCCACAAAGATAGTCCTGCAGCGAAATACCTC
ATGGAACATGGGGTAGATAGAAGAGATTTCAACTCTTATGGAAGTCGCCG
TGGTAATGATGAGATTATGGCGAGGGGCACTTTCGCAAATATCCGTATCG
TGAACAAACTATTGAAAGGAGAAGTTGGGCCTAAAACAATTCATATTCCC
ACCGGAGAGAAGCTATCTGTATATGATGTTGCCATGAGATACAAGGCCGC
AGGACAGGATACCATAATTTTGGCTGGTGTTGAATATGGGAGTGGAAGTT
CTCGGGACTGGGCTGCCAAAGGTCCAGTTCTGCTGGGTGTAAAAGCAGTC
ATTGCCAAGAGCTTTGAGCGAATTCACCGCAGTAATCTGGTGGGCATGGG
CATCATTCCACTGTGTTTCAAGGCTGGAGAGGATGCTGACACTCTCGGGT
TGACTGGCCACGAGCGCTATACCATCGATCTTCCCAACACCGTGAGTGAA
ATCAGACCTGGACAAGATGTCACTGTGGCTACAGACTGTGGCAAGTCATT
CACCTGTACTGTACGATTTGATACGGAGGTGGAACTGGCTTATTTCAACC
ATGGAGGCATTTTGCAATACGTCATCAGGAACTTGATCGGCTCGAAACAG
TGA
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protein sequence of Tc01v2_p000990.1

>Tc01v2_p000990.1 ID=Tc01v2_p000990.1|Name=Tc01v2_p000990.1|organism=Theobroma cacao|type=polypeptide|length=901bp
MATENPFNSILKTLEKPGGGEFGKYYSLPALDDPRIDKLPYSIKILLESA
IRNCDEFQVKSKDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVD
LACMRDAMNNLGGNSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELE
FKRNKERFAFLKWGSNAFDNMLVVPPGSGIVHQVNLEYLGRVVFNTNGVL
YPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFK
LLGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMRELSLADRATI
ANMSPEYGATMGFFPVDHVTLQYLRLTGRSDETIAMIESYLRANKMFVDY
SEPQTEKVYSTYLDLKLEDVEPCISGPKRPHDRVPLKEMKADWHACLDNR
VGFKGFAIPKESQNKVAKFSFRGTPAELRHGDVVIAAITSCTNTSNPSVM
LGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGF
HIVGYGCTTCIGNSGDIDESVASAISENDMVAAAVLSGNRNFEGRVHPLT
RANYLASPPLVVAYALAGTVDIDFVTEPIGTAKDGKEIFFKDIWPSSEEV
ATVVHSSVLPDMFKATYEAITKGNPMWNQLSVPSSTLYSWDPTSTYIHEP
PYFKGMTMSPPGPHGVKDACCLLNLGDSITTDHISPAGSIHKDSPAAKYL
MEHGVDRRDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPKTIHIP
TGEKLSVYDVAMRYKAAGQDTIILAGVEYGSGSSRDWAAKGPVLLGVKAV
IAKSFERIHRSNLVGMGIIPLCFKAGEDADTLGLTGHERYTIDLPNTVSE
IRPGQDVTVATDCGKSFTCTVRFDTEVELAYFNHGGILQYVIRNLIGSKQ
*
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