Tc01v2_t000830.2

Overview
NameTc01v2_t000830.2
Unique NameTc01v2_t000830.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1920
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
ProductATP-dependent DNA helicase Q-like 3, transcript variant X2
NoteATP-dependent DNA helicase Q-like 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610689
GenbankXM_018127373.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000830Tc01v2_g000830Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000830.2Tc01v2_p000830.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2758auto2758Theobroma cacaoexon
exon-auto2759auto2759Theobroma cacaoexon
exon-auto2760auto2760Theobroma cacaoexon
exon-auto2761auto2761Theobroma cacaoexon
exon-auto2762auto2762Theobroma cacaoexon
exon-auto2763auto2763Theobroma cacaoexon
exon-auto2764auto2764Theobroma cacaoexon
exon-auto2765auto2765Theobroma cacaoexon
exon-auto2766auto2766Theobroma cacaoexon
exon-auto2767auto2767Theobroma cacaoexon
exon-auto2768auto2768Theobroma cacaoexon
exon-auto2769auto2769Theobroma cacaoexon
exon-auto2770auto2770Theobroma cacaoexon
exon-auto2771auto2771Theobroma cacaoexon
exon-auto2772auto2772Theobroma cacaoexon
exon-auto2773auto2773Theobroma cacaoexon
exon-auto2774auto2774Theobroma cacaoexon
exon-auto2775auto2775Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2776auto2776Theobroma cacaoCDS
CDS-auto2777auto2777Theobroma cacaoCDS
CDS-auto2778auto2778Theobroma cacaoCDS
CDS-auto2779auto2779Theobroma cacaoCDS
CDS-auto2780auto2780Theobroma cacaoCDS
CDS-auto2781auto2781Theobroma cacaoCDS
CDS-auto2782auto2782Theobroma cacaoCDS
CDS-auto2783auto2783Theobroma cacaoCDS
CDS-auto2784auto2784Theobroma cacaoCDS
CDS-auto2785auto2785Theobroma cacaoCDS
CDS-auto2786auto2786Theobroma cacaoCDS
CDS-auto2787auto2787Theobroma cacaoCDS
CDS-auto2788auto2788Theobroma cacaoCDS
CDS-auto2789auto2789Theobroma cacaoCDS
CDS-auto2790auto2790Theobroma cacaoCDS
CDS-auto2791auto2791Theobroma cacaoCDS
CDS-auto2792auto2792Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000830.2 ID=Tc01v2_t000830.2|Name=Tc01v2_t000830.2|organism=Theobroma cacao|type=mRNA|length=1920bp
ATGGAAAACCAAGTAATGGCATTGAAAGAGAAAGGAATTGCTGCTGAATT
TCTCTCCTCAACTCAAACGTCACAGGTGAAGAACAAGATTCATGAAGATC
TTGATTCTGGACAACCATCTTTACGCTTGCTTTATGTGACACCCGAGTTA
ATTGCCACTTCAGGGTTTATGTCAAAGCTGACAAAGATTCATGGCAGAGG
ATTGTTAAATCTCATTGCTGTAGACGAGGCACATTGCATCTCATCTTGGG
GCCACGATTTCAGGCCTAGCTATTCTAAGCTTTCATCTTTGAGGAACAGT
CTACCAGATGTAGCAATATTGGCTTTGACTGCCACTGCTGTTCCTAAAGT
CCAGAAGGATGTGATAGACTCCTTAAACTTGCAAAACCCTTTAATCCTTA
AATCATCTTTCAACCGTCCAAATATATATTATGAAGTTCGATACAAAGAT
CTTTTGGATGATGGTTATGCTGACTTGTGTAATGTGCTCAAATCTGCTGG
GGATGTCTGTGGAATTGTTTACTGCCTTGAACGGGCAACTTGTGATGACT
TGTCCACCCATCTCTCCAGAAATGGAATTTCCTGTGCTGCCTATCATGCA
GGGCTAAATAATAAATCGCGGAGCTCTGTTTTAGATGATTGGAGTTCTTC
CAAGATACAGGTTGTTGTGGCCACAGTAGCTTTTGGAATGGGCATAGACA
GAAAGGATGTCAGAATAGTTTGCCATTTTAATATCCCGAAGTCAATGGAA
GCCTTCTATCAAGAGTCGGGTAGAGCTGGTCGTGACCAATTGCCTTCAAG
AAGCTTGTTATACTATGGAATGGATGATCGAAAAAGGATGGAATTTATTC
TTAGCAGTGCTGAGAGCAAGAAACTGCAATCATCAAATTCACAACATGGG
TTTTCAAAAAAGTCAATGTCTGATTTTAATCTGATGGTTGAATATTGTGA
AGGTTCCAGATGTCGTAGGAAAAAGATTCTTGAGAGCTTTGGGGAAGAGG
TATCTGCATTGCTATGTAAAAAATCATGTGATGCCTGCAAACATCCAAAC
CTTATCACCAAGTGTCTGGAAGAGCTCGCATCTGCTTGTGCTGTTCGGCA
GAGAAATGGTTTTTCAAGAATCTTAATGAGCAGCTCCACAGATGCCATTG
ATAATGCCCAGTTCTCAGAATTCTGGAATCATGATGATGAAGCAAGTGGC
TCTGAGGAGGATATATCTGATTCTGACGATGGATTTGAGCTTGCAAAGAG
CATATCCAGATGCAAAGTTTCGAAAAAATCTGGGATAAATGAGAAGATTG
AGTTCTTGCAGCGTGCAGAAGAGAACTATTATCAGAACAAAGCCCCTGAT
AAACAGACCAATAAACCTGACAAAAATGCCATATCCGAAATGCTGAGAGA
ATCAAGCAAGCAAAGATTGTTAGATGCCCTGAAGCAGGCCCATCAGCGGC
TTGGTGACTTGAAGGTCGATTTTGAAGCATCTTCAACTTTCCTTGAAAGT
GAGTGCTTTAAGAAATATGGGAAGAGCGGGAAATCATTTTATTATTCTCA
AGTGGCAAGCACGGTAAGGTGGCTATCAACCACAAGCTCTGTCGAGATAA
CAAATCGGGTTGCTACCGGTACCACTTCCCATGAGAACAGTACGCGTAAG
GAAAATCCACCTTTAACAGCGTCAACCAAGTTTGTTCAAAGAGAAAAAGA
AATTATTGGTGAACAACATTGTGGCAACATTGAGTTAGAGACTTCAGCAA
GTGCTTTGCCTCTGCAAAATCCTTCGCCAAGTACTAAGCTGCCCACAATT
CCATCTTTCTCACAGTTTGTCAACAACAGAAAGTCAAAAGAAACTCAACC
AAATGCATCAGAGAAGCATTCACCAAAAAGCCTAGAGACAAATATGAAGA
AGAGAATGAGGTTGCAGTAG
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protein sequence of Tc01v2_p000830.2

>Tc01v2_p000830.2 ID=Tc01v2_p000830.2|Name=Tc01v2_p000830.2|organism=Theobroma cacao|type=polypeptide|length=640bp
MENQVMALKEKGIAAEFLSSTQTSQVKNKIHEDLDSGQPSLRLLYVTPEL
IATSGFMSKLTKIHGRGLLNLIAVDEAHCISSWGHDFRPSYSKLSSLRNS
LPDVAILALTATAVPKVQKDVIDSLNLQNPLILKSSFNRPNIYYEVRYKD
LLDDGYADLCNVLKSAGDVCGIVYCLERATCDDLSTHLSRNGISCAAYHA
GLNNKSRSSVLDDWSSSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSME
AFYQESGRAGRDQLPSRSLLYYGMDDRKRMEFILSSAESKKLQSSNSQHG
FSKKSMSDFNLMVEYCEGSRCRRKKILESFGEEVSALLCKKSCDACKHPN
LITKCLEELASACAVRQRNGFSRILMSSSTDAIDNAQFSEFWNHDDEASG
SEEDISDSDDGFELAKSISRCKVSKKSGINEKIEFLQRAEENYYQNKAPD
KQTNKPDKNAISEMLRESSKQRLLDALKQAHQRLGDLKVDFEASSTFLES
ECFKKYGKSGKSFYYSQVASTVRWLSTTSSVEITNRVATGTTSHENSTRK
ENPPLTASTKFVQREKEIIGEQHCGNIELETSASALPLQNPSPSTKLPTI
PSFSQFVNNRKSKETQPNASEKHSPKSLETNMKKRMRLQ*
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