Tc01v2_t000830.1

Overview
NameTc01v2_t000830.1
Unique NameTc01v2_t000830.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2187
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ProductATP-dependent DNA helicase Q-like 3, transcript variant X1
NoteATP-dependent DNA helicase Q-like 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610689
GenbankXM_018127367.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000830Tc01v2_g000830Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000830.1Tc01v2_p000830.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2717auto2717Theobroma cacaoexon
exon-auto2718auto2718Theobroma cacaoexon
exon-auto2719auto2719Theobroma cacaoexon
exon-auto2720auto2720Theobroma cacaoexon
exon-auto2721auto2721Theobroma cacaoexon
exon-auto2722auto2722Theobroma cacaoexon
exon-auto2723auto2723Theobroma cacaoexon
exon-auto2724auto2724Theobroma cacaoexon
exon-auto2725auto2725Theobroma cacaoexon
exon-auto2726auto2726Theobroma cacaoexon
exon-auto2727auto2727Theobroma cacaoexon
exon-auto2728auto2728Theobroma cacaoexon
exon-auto2729auto2729Theobroma cacaoexon
exon-auto2730auto2730Theobroma cacaoexon
exon-auto2731auto2731Theobroma cacaoexon
exon-auto2732auto2732Theobroma cacaoexon
exon-auto2733auto2733Theobroma cacaoexon
exon-auto2734auto2734Theobroma cacaoexon
exon-auto2735auto2735Theobroma cacaoexon
exon-auto2736auto2736Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2737auto2737Theobroma cacaoCDS
CDS-auto2738auto2738Theobroma cacaoCDS
CDS-auto2739auto2739Theobroma cacaoCDS
CDS-auto2740auto2740Theobroma cacaoCDS
CDS-auto2741auto2741Theobroma cacaoCDS
CDS-auto2742auto2742Theobroma cacaoCDS
CDS-auto2743auto2743Theobroma cacaoCDS
CDS-auto2744auto2744Theobroma cacaoCDS
CDS-auto2745auto2745Theobroma cacaoCDS
CDS-auto2746auto2746Theobroma cacaoCDS
CDS-auto2747auto2747Theobroma cacaoCDS
CDS-auto2748auto2748Theobroma cacaoCDS
CDS-auto2749auto2749Theobroma cacaoCDS
CDS-auto2750auto2750Theobroma cacaoCDS
CDS-auto2751auto2751Theobroma cacaoCDS
CDS-auto2752auto2752Theobroma cacaoCDS
CDS-auto2753auto2753Theobroma cacaoCDS
CDS-auto2754auto2754Theobroma cacaoCDS
CDS-auto2755auto2755Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000830.1 ID=Tc01v2_t000830.1|Name=Tc01v2_t000830.1|organism=Theobroma cacao|type=mRNA|length=2187bp
ATGAAGAAGTCGCCATTGCCGGTGCAAAACCTTAGCGGCAAAGAGAAGCA
GCGGGGATGTGGAAAAGAAGCTTTGGTTAAGCTCTTGAGATGGCATTTCG
GTCATCCAGATTTCAGAGGCAAACAGTTGGAAGCCATCGAAGCCGTTTTA
TCAGGAAGAGATTGTTTTTGTCTGATGCCGACTGGAGGAGGAAAATCAAT
GTGTTATCAAATCCCTGCGCTGGCTAAAACGGGAATTGTGCTCGTCGTTT
CTCCATTGATAGCTTTGATGGAAAACCAAGTAATGGCATTGAAAGAGAAA
GGAATTGCTGCTGAATTTCTCTCCTCAACTCAAACGTCACAGGTGAAGAA
CAAGATTCATGAAGATCTTGATTCTGGACAACCATCTTTACGCTTGCTTT
ATGTGACACCCGAGTTAATTGCCACTTCAGGGTTTATGTCAAAGCTGACA
AAGATTCATGGCAGAGGATTGTTAAATCTCATTGCTGTAGACGAGGCACA
TTGCATCTCATCTTGGGGCCACGATTTCAGGCCTAGCTATTCTAAGCTTT
CATCTTTGAGGAACAGTCTACCAGATGTAGCAATATTGGCTTTGACTGCC
ACTGCTGTTCCTAAAGTCCAGAAGGATGTGATAGACTCCTTAAACTTGCA
AAACCCTTTAATCCTTAAATCATCTTTCAACCGTCCAAATATATATTATG
AAGTTCGATACAAAGATCTTTTGGATGATGGTTATGCTGACTTGTGTAAT
GTGCTCAAATCTGCTGGGGATGTCTGTGGAATTGTTTACTGCCTTGAACG
GGCAACTTGTGATGACTTGTCCACCCATCTCTCCAGAAATGGAATTTCCT
GTGCTGCCTATCATGCAGGGCTAAATAATAAATCGCGGAGCTCTGTTTTA
GATGATTGGAGTTCTTCCAAGATACAGGTTGTTGTGGCCACAGTAGCTTT
TGGAATGGGCATAGACAGAAAGGATGTCAGAATAGTTTGCCATTTTAATA
TCCCGAAGTCAATGGAAGCCTTCTATCAAGAGTCGGGTAGAGCTGGTCGT
GACCAATTGCCTTCAAGAAGCTTGTTATACTATGGAATGGATGATCGAAA
AAGGATGGAATTTATTCTTAGCAGTGCTGAGAGCAAGAAACTGCAATCAT
CAAATTCACAACATGGGTTTTCAAAAAAGTCAATGTCTGATTTTAATCTG
ATGGTTGAATATTGTGAAGGTTCCAGATGTCGTAGGAAAAAGATTCTTGA
GAGCTTTGGGGAAGAGGTATCTGCATTGCTATGTAAAAAATCATGTGATG
CCTGCAAACATCCAAACCTTATCACCAAGTGTCTGGAAGAGCTCGCATCT
GCTTGTGCTGTTCGGCAGAGAAATGGTTTTTCAAGAATCTTAATGAGCAG
CTCCACAGATGCCATTGATAATGCCCAGTTCTCAGAATTCTGGAATCATG
ATGATGAAGCAAGTGGCTCTGAGGAGGATATATCTGATTCTGACGATGGA
TTTGAGCTTGCAAAGAGCATATCCAGATGCAAAGTTTCGAAAAAATCTGG
GATAAATGAGAAGATTGAGTTCTTGCAGCGTGCAGAAGAGAACTATTATC
AGAACAAAGCCCCTGATAAACAGACCAATAAACCTGACAAAAATGCCATA
TCCGAAATGCTGAGAGAATCAAGCAAGCAAAGATTGTTAGATGCCCTGAA
GCAGGCCCATCAGCGGCTTGGTGACTTGAAGGTCGATTTTGAAGCATCTT
CAACTTTCCTTGAAAGTGAGTGCTTTAAGAAATATGGGAAGAGCGGGAAA
TCATTTTATTATTCTCAAGTGGCAAGCACGGTAAGGTGGCTATCAACCAC
AAGCTCTGTCGAGATAACAAATCGGGTTGCTACCGGTACCACTTCCCATG
AGAACAGTACGCGTAAGGAAAATCCACCTTTAACAGCGTCAACCAAGTTT
GTTCAAAGAGAAAAAGAAATTATTGGTGAACAACATTGTGGCAACATTGA
GTTAGAGACTTCAGCAAGTGCTTTGCCTCTGCAAAATCCTTCGCCAAGTA
CTAAGCTGCCCACAATTCCATCTTTCTCACAGTTTGTCAACAACAGAAAG
TCAAAAGAAACTCAACCAAATGCATCAGAGAAGCATTCACCAAAAAGCCT
AGAGACAAATATGAAGAAGAGAATGAGGTTGCAGTAG
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protein sequence of Tc01v2_p000830.1

>Tc01v2_p000830.1 ID=Tc01v2_p000830.1|Name=Tc01v2_p000830.1|organism=Theobroma cacao|type=polypeptide|length=729bp
MKKSPLPVQNLSGKEKQRGCGKEALVKLLRWHFGHPDFRGKQLEAIEAVL
SGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVSPLIALMENQVMALKEK
GIAAEFLSSTQTSQVKNKIHEDLDSGQPSLRLLYVTPELIATSGFMSKLT
KIHGRGLLNLIAVDEAHCISSWGHDFRPSYSKLSSLRNSLPDVAILALTA
TAVPKVQKDVIDSLNLQNPLILKSSFNRPNIYYEVRYKDLLDDGYADLCN
VLKSAGDVCGIVYCLERATCDDLSTHLSRNGISCAAYHAGLNNKSRSSVL
DDWSSSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGR
DQLPSRSLLYYGMDDRKRMEFILSSAESKKLQSSNSQHGFSKKSMSDFNL
MVEYCEGSRCRRKKILESFGEEVSALLCKKSCDACKHPNLITKCLEELAS
ACAVRQRNGFSRILMSSSTDAIDNAQFSEFWNHDDEASGSEEDISDSDDG
FELAKSISRCKVSKKSGINEKIEFLQRAEENYYQNKAPDKQTNKPDKNAI
SEMLRESSKQRLLDALKQAHQRLGDLKVDFEASSTFLESECFKKYGKSGK
SFYYSQVASTVRWLSTTSSVEITNRVATGTTSHENSTRKENPPLTASTKF
VQREKEIIGEQHCGNIELETSASALPLQNPSPSTKLPTIPSFSQFVNNRK
SKETQPNASEKHSPKSLETNMKKRMRLQ*
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