Tc01v2_t000620.1

Overview
NameTc01v2_t000620.1
Unique NameTc01v2_t000620.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1104
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productisocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial
NoteIsocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610664
GenbankXM_007046476.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000620Tc01v2_g000620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000620.1Tc01v2_p000620.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2431auto2431Theobroma cacaoexon
exon-auto2432auto2432Theobroma cacaoexon
exon-auto2433auto2433Theobroma cacaoexon
exon-auto2434auto2434Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2435auto2435Theobroma cacaoCDS
CDS-auto2436auto2436Theobroma cacaoCDS
CDS-auto2437auto2437Theobroma cacaoCDS
CDS-auto2438auto2438Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000620.1 ID=Tc01v2_t000620.1|Name=Tc01v2_t000620.1|organism=Theobroma cacao|type=mRNA|length=1104bp
ATGGCCCGAAGATCCGGTACGATCCTCAAACAGCTCTTGAGCTCTCGATG
CTCTAACCTCACACCGAGCCGATCCGTCACCTACATGCCACGACCGGGCG
ACGGCGCACCGCGAGGGGTTACCTTGATCCCGGGCGACGGGATCGGCCCT
CTGGTGACTGGCGCCGTGGAGCAAGTGATGGAGGCGATGCACGCGCCGGT
GTATTTCGAGCGATACGATGTTCACGGCGACATGAATCGCGTGCCTCAAG
AAGTGATCGAGTCGATCAAGAAGAACAAAGTTTGTCTGAAAGGAGGATTA
GCGACGCCGATGGGAGGTGGTGTCAGCTCGCTTAACGTCCAGCTGAGAAG
AGAGCTCGATTTGTACGCTTCGCTCGTCAATTGCTTCAATTTGCCAGGCT
TGCCTACGAGGCACGAGAATGTCGATATTGTGGTGATTAGAGAGAACACG
GAAGGCGAATACTCTGGCCTCGAGCACGAGGTCGTCCCTGGAGTCGTTGA
GAGCCTTAAGGTGATAACAAAGTTCTGTTCGGAACGAATTGCAAAATATG
CATTCGAATATGCTTATTTAAATAATAGAAAGAAAGTGACTGCTGTGCAT
AAGGCCAACATTATGAAGCTTGCTGATGGCTTGTTCTTGGAATCATGCCG
AGAGGTTGCTACCAAGTATCCGGGGATTAAGTACAATGAAATAATCGTGG
ACAATTGCTGTATGCAGCTTGTTTCGAAGCCTGAGCAGTTTGATGTCATG
GTGACACCCAATCTTTATGGAAATTTAGTTGCAAATACAGCTGCTGGTAT
TGCTGGGGGCACTGGAGTTATGCCTGGAGGCAATGTCGGGGCTGACCATG
CTGTTTTTGAGCAAGGAGCCTCTGCAGGAAATGTGGGCAATGAGAAACTG
GTTGAACAGAAGAAGGCAAACCCAGTGGCCCTGCTTCTCTCATCTGCAAT
GATGTTGAGACATCTGCAGTTCCCCTCATTTGCCGATCGGCTGGAAACTG
CTGTGAAACGGGTTATATCAGAGGGCAAGTACCGAACGAAGGATCTTGGA
GGAACCAGTACCAGTCAAGAGGTTGTTGATGCAGTCATAGACGCACTAGA
CTGA
back to top

protein sequence of Tc01v2_p000620.1

>Tc01v2_p000620.1 ID=Tc01v2_p000620.1|Name=Tc01v2_p000620.1|organism=Theobroma cacao|type=polypeptide|length=368bp
MARRSGTILKQLLSSRCSNLTPSRSVTYMPRPGDGAPRGVTLIPGDGIGP
LVTGAVEQVMEAMHAPVYFERYDVHGDMNRVPQEVIESIKKNKVCLKGGL
ATPMGGGVSSLNVQLRRELDLYASLVNCFNLPGLPTRHENVDIVVIRENT
EGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVH
KANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVM
VTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKL
VEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEGKYRTKDLG
GTSTSQEVVDAVIDALD*
back to top