Tc01v2_t000580.4

Overview
NameTc01v2_t000580.4
Unique NameTc01v2_t000580.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1314
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
ProductG2/mitotic-specific cyclin-2, transcript variant X2
NoteG2/mitotic-specific cyclin-1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610660
GenbankXM_018114082.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000580Tc01v2_g000580Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000580.4Tc01v2_p000580.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto2332auto2332Theobroma cacaoexon
exon-auto2333auto2333Theobroma cacaoexon
exon-auto2334auto2334Theobroma cacaoexon
exon-auto2335auto2335Theobroma cacaoexon
exon-auto2336auto2336Theobroma cacaoexon
exon-auto2337auto2337Theobroma cacaoexon
exon-auto2338auto2338Theobroma cacaoexon
exon-auto2339auto2339Theobroma cacaoexon
exon-auto2340auto2340Theobroma cacaoexon
exon-auto2341auto2341Theobroma cacaoexon
exon-auto2342auto2342Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto2343auto2343Theobroma cacaoCDS
CDS-auto2344auto2344Theobroma cacaoCDS
CDS-auto2345auto2345Theobroma cacaoCDS
CDS-auto2346auto2346Theobroma cacaoCDS
CDS-auto2347auto2347Theobroma cacaoCDS
CDS-auto2348auto2348Theobroma cacaoCDS
CDS-auto2349auto2349Theobroma cacaoCDS
CDS-auto2350auto2350Theobroma cacaoCDS
CDS-auto2351auto2351Theobroma cacaoCDS
CDS-auto2352auto2352Theobroma cacaoCDS
CDS-auto2353auto2353Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000580.4 ID=Tc01v2_t000580.4|Name=Tc01v2_t000580.4|organism=Theobroma cacao|type=mRNA|length=1314bp
ATGGATCATATATCTGATGAGAACAACCAAACTAATTTTGTAAAACCCAC
AAATTTTCAAGAAGGAGGTGCAGTTATGGGTAGCAGAAAGTTTGGGCAGG
AGACTAGGCACAACAGAAGAGCTTTGAGTGTCATTAATCAGAATTTAGTA
GGAGCTAAAGCATATCCTTGTGTTGTTAATAAGAGAGGCTTGTCAGAACG
AAATGAAAATTTTGAAAACAACCAGCTTGATCCAGTGCACAGACCTATTA
CCAGGAAGTTTGCTGCCCAAATTTTTAGTAGTCAACGGCATTGCCCCGAG
GAAACTAAGAAGCTGAAACCATCAGTTCCAAGCTCAAATGAGTTTGGAGA
TTGCATATTCATAGATGTGGAGGAGCACAAGGCATCTGTAGACCACCCAG
TACCCATGTTCCTAGAAGAAACAGAAACTAGGTTCAGTGAACCTCAAGAG
ATGGAGGAAATTGAAATGGAGGATATAGTTGAAGAGCCAGTTGTTGATAT
TGATGGCTCTGATGCAAAGAATCCATTGGCGGTTGTCGACTATGTTGAAG
ATATGTATGCCTACTATGGAAAGATGGAGACGTTTAGCTGTGTTTCACCA
AACTACATGGCGCAGCAGTCTGACATTAATGAGAAAATGAGGGCTATTCT
GATCGACTGGCTTATTGAGGTGCACGATAAATTTGACCTCATGGGCGAGA
CATTGTTTCTTACTGTTAATCTCATAGACAGATTTTTGTCCCAGCAAACA
GTGGTAAGAAAGAAGCTTCAGTTGGTAGGACTGGTTGCTATGCTCTTAGC
ATGCAAGTACGAGGAGGTTTCTGTTCCTGTTGTTGGAGATCTAATCCTTA
TATCAGATAAAGCTTACTCTAGGAAAGAAGTTCTCGAAATGGAGAGATTG
ATGCTTAACACAATGCAGTTTAACATGTCATTTCCAACACCATATGTTTT
CATGAGGAGGTTCCTCAAGGCTGCTCAGTCCGACAAGAAGTTTGAGCTTC
TGTCCTTCTTCTTGATTGAGCTTGCCCTAGTGGAGTATGAGATGCTTAAG
TTCCAACCATCACTGCTAGCCGCTGCTGCAATCTACACTGCTCAATGCAG
TCTTTACGGGTTCAAGCAATGGAGTAAGACATGCGAGTGGCATAGCAGCT
ACTCAGAAGATCAGCTGTTAGAATGTTCAAGACTGATGGTTGGTTTCCAT
CAGAAGGCAGCAACAGGGAAACTAACAGGGGTACATAGGAAGTACTGTAC
ATCCAAGTTTGACTACACAGCAAAATGTGAACCTGCAAAATTTCTAGTAG
AGACCTTACCGTAG
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protein sequence of Tc01v2_p000580.4

>Tc01v2_p000580.4 ID=Tc01v2_p000580.4|Name=Tc01v2_p000580.4|organism=Theobroma cacao|type=polypeptide|length=438bp
MDHISDENNQTNFVKPTNFQEGGAVMGSRKFGQETRHNRRALSVINQNLV
GAKAYPCVVNKRGLSERNENFENNQLDPVHRPITRKFAAQIFSSQRHCPE
ETKKLKPSVPSSNEFGDCIFIDVEEHKASVDHPVPMFLEETETRFSEPQE
MEEIEMEDIVEEPVVDIDGSDAKNPLAVVDYVEDMYAYYGKMETFSCVSP
NYMAQQSDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQQT
VVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMERL
MLNTMQFNMSFPTPYVFMRRFLKAAQSDKKFELLSFFLIELALVEYEMLK
FQPSLLAAAAIYTAQCSLYGFKQWSKTCEWHSSYSEDQLLECSRLMVGFH
QKAATGKLTGVHRKYCTSKFDYTAKCEPAKFLVETLP*
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