Tc01v2_t000230.3

Overview
NameTc01v2_t000230.3
Unique NameTc01v2_t000230.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length678
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productribosomal L1 domain-containing protein CG13096, transcript variant X3
NotePutative 50S ribosomal protein L32, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610623
GenbankXM_018129924.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000230Tc01v2_g000230Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000230.3Tc01v2_p000230.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto1002auto1002Theobroma cacaoexon
exon-auto1003auto1003Theobroma cacaoexon
exon-auto1004auto1004Theobroma cacaoexon
exon-auto1005auto1005Theobroma cacaoexon
exon-auto1006auto1006Theobroma cacaoexon
exon-auto1007auto1007Theobroma cacaoexon
exon-auto1008auto1008Theobroma cacaoexon
exon-auto1009auto1009Theobroma cacaoexon
exon-auto1010auto1010Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto1011auto1011Theobroma cacaoCDS
CDS-auto1012auto1012Theobroma cacaoCDS
CDS-auto1013auto1013Theobroma cacaoCDS
CDS-auto1014auto1014Theobroma cacaoCDS
CDS-auto1015auto1015Theobroma cacaoCDS
CDS-auto1016auto1016Theobroma cacaoCDS
CDS-auto1017auto1017Theobroma cacaoCDS
CDS-auto1018auto1018Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000230.3 ID=Tc01v2_t000230.3|Name=Tc01v2_t000230.3|organism=Theobroma cacao|type=mRNA|length=678bp
ATGGCTTATTATAGGGGACGTGGACGAGGAAGGGGATACGGAGGAGGTGG
CTTTTCTGGGTATTTTAAGCCTGAGCCAGTTGTGCTTTTCCCTGATGTTG
AATTACCTGATGTAAAAGGTGTGCCTGAAGAGAAGACCTTAGTCATTTGG
AATTCAAGGTTGCAAAACTATTGGAAAGCCTCTCCTTACTATATTGAAGA
AAATGTTTCAAAGAAAAGCCAGAGCAAGGACATAGAAAGATATTCTGACT
GGGAGAAGCCAAAGAGCACCTCAAAACGCGATAGTCTTAACCAGATTCTA
CAACTCCAATCTCATAATTTTCCTAAAGAATTGATTGGAGGTTCGCGATT
GAAACAACTTATGCAACTATTGACTTGGTATTCAAGACAATATTCAAGGA
GAGCTCAGCGAAGTGCCAAAAAGATGCGATGGAATCTAGACTCAGGCTTG
GACAAATTAGATACGTTCGAGAAATTTGAACAGGGTCTTGAGGATCCAGA
CAAAGAAGGAAAGGAAAAGAAAGGTGATGGAGAAGAAGACAATACAGATG
AAGAGCCGGGAGAACTGTCTGACGAATCATACAGTGATGATGGAGATTAT
AATGAGAATGAACATTTTGATGATGATGAAGATGATTATAACCAAGAAGA
TGGCAATGATGATGAACCTATATATTAG
back to top

protein sequence of Tc01v2_p000230.3

>Tc01v2_p000230.3 ID=Tc01v2_p000230.3|Name=Tc01v2_p000230.3|organism=Theobroma cacao|type=polypeptide|length=226bp
MAYYRGRGRGRGYGGGGFSGYFKPEPVVLFPDVELPDVKGVPEEKTLVIW
NSRLQNYWKASPYYIEENVSKKSQSKDIERYSDWEKPKSTSKRDSLNQIL
QLQSHNFPKELIGGSRLKQLMQLLTWYSRQYSRRAQRSAKKMRWNLDSGL
DKLDTFEKFEQGLEDPDKEGKEKKGDGEEDNTDEEPGELSDESYSDDGDY
NENEHFDDDEDDYNQEDGNDDEPIY*
back to top