Tc01v2_t000020.3

Overview
NameTc01v2_t000020.3
Unique NameTc01v2_t000020.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length732
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
ProductN-acylphosphatidylethanolamine synthase, transcript variant X3
NoteN-acylphosphatidylethanolamine synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610616
GenbankXM_018114388.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc01v2_g000020Tc01v2_g000020Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc01v2_p000020.3Tc01v2_p000020.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto84auto84Theobroma cacaoexon
exon-auto85auto85Theobroma cacaoexon
exon-auto86auto86Theobroma cacaoexon
exon-auto87auto87Theobroma cacaoexon
exon-auto88auto88Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto89auto89Theobroma cacaoCDS
CDS-auto90auto90Theobroma cacaoCDS
CDS-auto91auto91Theobroma cacaoCDS
CDS-auto92auto92Theobroma cacaoCDS
CDS-auto93auto93Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc01v2_t000020.3 ID=Tc01v2_t000020.3|Name=Tc01v2_t000020.3|organism=Theobroma cacao|type=mRNA|length=732bp
ATGCCGAAACCCTCATTCGTCTTGTCCGCTCTCGACCGCCTGGCATGCCA
CTTCTCACCGTTAGCAATCACATGTCTACGTGGCTTGGATGATCCACTTC
TTTGGGGATTCAAGGGTTTCCCCTCCTTGGATGCAAAATTGGCTCGCTGG
GTACTTGCTGCAGAAGACATTTGTTTCAAAAATTTTCTCCTTACTTATTT
TTTTAGACTTGTAAATTGTGCAGGTAAATGCATACCTATTACAAGGGGTG
CCGGAATTTATCAGGAACACATGAATGAAGCCCTTGAGTGCTTAAACAAT
GGAGCCTGGCTGCATACATTTCCTGAAGGTAAAGTTTCACAAGAAGATGC
ACCCATAAGACGATTAAAATGGGGAACTGCTAGTCTAATTGTTCGTGCTC
ATGTGACTCCAATAGTTCTTCCCATTGTTCATTGTGGTTTAGAAGAGGTG
ATGCCAGAAAAATTTTTTCCTGACAGAAGGCCTCCATTTCCATTATGCAA
TAAAAATATCAAAATTATCATTGGTGAGCCACTAGAATTCGATATTCCTA
GAATGAGGCAGACGGCGATTTCCATATCTCGTGATCTATCATGTACTTAT
CGAGGATGGCCCATTCTCTCCCCATATGGATTGGATGAAGCAGCACAGAG
ATGCCTATACTCAACTATTTCAGAGCAAATACAAACTGCCATGGAGGGTT
TGCGAAATGCTGGTAAAAGTTTCTTAAAGTAG
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protein sequence of Tc01v2_p000020.3

>Tc01v2_p000020.3 ID=Tc01v2_p000020.3|Name=Tc01v2_p000020.3|organism=Theobroma cacao|type=polypeptide|length=244bp
MPKPSFVLSALDRLACHFSPLAITCLRGLDDPLLWGFKGFPSLDAKLARW
VLAAEDICFKNFLLTYFFRLVNCAGKCIPITRGAGIYQEHMNEALECLNN
GAWLHTFPEGKVSQEDAPIRRLKWGTASLIVRAHVTPIVLPIVHCGLEEV
MPEKFFPDRRPPFPLCNKNIKIIIGEPLEFDIPRMRQTAISISRDLSCTY
RGWPILSPYGLDEAAQRCLYSTISEQIQTAMEGLRNAGKSFLK*
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